Experiment: Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0065 and Psest_0066 are separated by 276 nucleotides Psest_0066 and Psest_0067 are separated by 8 nucleotides
Psest_0065: Psest_0065 - Subtilisin-like serine proteases, at 65,325 to 66,716
_0065
Psest_0066: Psest_0066 - Protein of unknown function (DUF3060)., at 66,993 to 67,493
_0066
Psest_0067: Psest_0067 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 67,502 to 68,500
_0067
Position (kb) 66
67
68 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 65.994 kb on + strand, within Psest_0065 at 66.162 kb on + strand, within Psest_0065 at 66.162 kb on + strand, within Psest_0065 at 66.162 kb on + strand, within Psest_0065 at 66.162 kb on + strand, within Psest_0065 at 66.162 kb on + strand, within Psest_0065 at 66.163 kb on - strand, within Psest_0065 at 66.163 kb on - strand, within Psest_0065 at 66.250 kb on - strand, within Psest_0065 at 66.250 kb on - strand, within Psest_0065 at 66.351 kb on + strand, within Psest_0065 at 66.351 kb on + strand, within Psest_0065 at 66.351 kb on + strand, within Psest_0065 at 66.352 kb on - strand, within Psest_0065 at 66.352 kb on - strand, within Psest_0065 at 66.352 kb on - strand, within Psest_0065 at 66.420 kb on + strand, within Psest_0065 at 66.421 kb on - strand, within Psest_0065 at 66.421 kb on - strand, within Psest_0065 at 66.507 kb on + strand, within Psest_0065 at 66.507 kb on + strand, within Psest_0065 at 66.507 kb on + strand, within Psest_0065 at 66.507 kb on + strand, within Psest_0065 at 66.508 kb on - strand, within Psest_0065 at 66.508 kb on - strand, within Psest_0065 at 66.508 kb on - strand, within Psest_0065 at 66.561 kb on + strand, within Psest_0065 at 66.562 kb on - strand, within Psest_0065 at 66.572 kb on - strand, within Psest_0065 at 66.652 kb on + strand at 66.719 kb on + strand at 66.719 kb on + strand at 66.719 kb on + strand at 66.719 kb on + strand at 66.720 kb on - strand at 66.720 kb on - strand at 66.723 kb on + strand at 66.724 kb on - strand at 66.856 kb on + strand at 66.856 kb on + strand at 66.856 kb on + strand at 66.856 kb on + strand at 66.856 kb on + strand at 66.856 kb on + strand at 66.856 kb on + strand at 66.857 kb on - strand at 66.857 kb on - strand at 67.421 kb on + strand, within Psest_0066 at 67.421 kb on + strand, within Psest_0066 at 67.421 kb on + strand at 67.422 kb on - strand, within Psest_0066 at 67.422 kb on - strand, within Psest_0066 at 67.699 kb on - strand, within Psest_0067 at 67.835 kb on + strand, within Psest_0067 at 67.917 kb on + strand, within Psest_0067
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.016 mg/ml remove 65,994 + Psest_0065 0.48 -0.9 66,162 + Psest_0065 0.60 -1.3 66,162 + Psest_0065 0.60 +0.5 66,162 + Psest_0065 0.60 +1.3 66,162 + Psest_0065 0.60 +1.2 66,162 + Psest_0065 0.60 +3.5 66,163 - Psest_0065 0.60 -0.7 66,163 - Psest_0065 0.60 +0.8 66,250 - Psest_0065 0.66 -1.2 66,250 - Psest_0065 0.66 +0.3 66,351 + Psest_0065 0.74 -2.6 66,351 + Psest_0065 0.74 +0.0 66,351 + Psest_0065 0.74 +0.1 66,352 - Psest_0065 0.74 -0.7 66,352 - Psest_0065 0.74 +0.3 66,352 - Psest_0065 0.74 +0.3 66,420 + Psest_0065 0.79 -1.0 66,421 - Psest_0065 0.79 +1.0 66,421 - Psest_0065 0.79 +1.0 66,507 + Psest_0065 0.85 +1.6 66,507 + Psest_0065 0.85 -0.9 66,507 + Psest_0065 0.85 +0.2 66,507 + Psest_0065 0.85 +2.6 66,508 - Psest_0065 0.85 +0.9 66,508 - Psest_0065 0.85 +0.2 66,508 - Psest_0065 0.85 -1.3 66,561 + Psest_0065 0.89 -0.8 66,562 - Psest_0065 0.89 -1.9 66,572 - Psest_0065 0.90 -1.5 66,652 + -0.2 66,719 + +0.6 66,719 + +1.1 66,719 + +0.5 66,719 + -0.4 66,720 - +0.4 66,720 - +0.7 66,723 + -0.3 66,724 - +1.0 66,856 + +0.4 66,856 + -0.6 66,856 + +0.6 66,856 + -1.9 66,856 + -0.4 66,856 + +0.2 66,856 + +0.3 66,857 - -1.4 66,857 - -1.5 67,421 + Psest_0066 0.85 +0.2 67,421 + Psest_0066 0.85 -1.8 67,421 + +1.5 67,422 - Psest_0066 0.86 -1.5 67,422 - Psest_0066 0.86 -1.3 67,699 - Psest_0067 0.20 -0.8 67,835 + Psest_0067 0.33 -1.0 67,917 + Psest_0067 0.42 -0.4
Or see this region's nucleotide sequence