Experiment: Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0356 and Psest_0357 are separated by 202 nucleotides Psest_0357 and Psest_0358 overlap by 4 nucleotides Psest_0358 and Psest_0359 are separated by 116 nucleotides Psest_0359 and Psest_0360 are separated by 57 nucleotides
Psest_0356: Psest_0356 - rarD protein, at 381,982 to 382,872
_0356
Psest_0357: Psest_0357 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 383,075 to 383,842
_0357
Psest_0358: Psest_0358 - Neutral trehalase, at 383,839 to 385,443
_0358
Psest_0359: Psest_0359 - Transcriptional regulators, at 385,560 to 386,312
_0359
Psest_0360: Psest_0360 - Predicted permease, DMT superfamily, at 386,370 to 387,272
_0360
Position (kb) 383
384
385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 382.844 kb on + strand at 382.938 kb on - strand at 382.950 kb on + strand at 382.950 kb on + strand at 382.950 kb on + strand at 382.951 kb on - strand at 383.027 kb on + strand at 383.027 kb on + strand at 383.224 kb on - strand, within Psest_0357 at 383.224 kb on - strand, within Psest_0357 at 383.224 kb on - strand, within Psest_0357 at 383.394 kb on - strand, within Psest_0357 at 383.394 kb on - strand, within Psest_0357 at 383.541 kb on - strand, within Psest_0357 at 383.780 kb on + strand at 383.780 kb on + strand at 383.780 kb on + strand at 383.780 kb on + strand at 383.780 kb on + strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.781 kb on - strand at 383.820 kb on + strand at 383.828 kb on + strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.829 kb on - strand at 383.872 kb on + strand at 383.872 kb on + strand at 383.872 kb on + strand at 383.872 kb on + strand at 383.873 kb on - strand at 383.873 kb on - strand at 383.873 kb on - strand at 383.873 kb on - strand at 384.094 kb on + strand, within Psest_0358 at 384.232 kb on + strand, within Psest_0358 at 384.232 kb on + strand, within Psest_0358 at 384.232 kb on + strand, within Psest_0358 at 384.233 kb on - strand, within Psest_0358 at 384.233 kb on - strand, within Psest_0358 at 384.233 kb on - strand, within Psest_0358 at 384.233 kb on - strand, within Psest_0358 at 384.265 kb on + strand, within Psest_0358 at 384.265 kb on + strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.266 kb on - strand, within Psest_0358 at 384.269 kb on - strand, within Psest_0358 at 384.280 kb on + strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.281 kb on - strand, within Psest_0358 at 384.352 kb on + strand, within Psest_0358 at 384.368 kb on - strand, within Psest_0358 at 384.397 kb on + strand, within Psest_0358 at 384.397 kb on + strand, within Psest_0358 at 384.398 kb on - strand, within Psest_0358 at 384.398 kb on - strand, within Psest_0358 at 384.398 kb on - strand, within Psest_0358 at 384.401 kb on - strand, within Psest_0358 at 384.401 kb on - strand, within Psest_0358 at 384.481 kb on + strand, within Psest_0358 at 384.506 kb on - strand, within Psest_0358 at 384.506 kb on - strand, within Psest_0358 at 384.814 kb on + strand, within Psest_0358 at 384.814 kb on + strand, within Psest_0358 at 384.814 kb on + strand, within Psest_0358 at 384.815 kb on - strand, within Psest_0358 at 384.815 kb on - strand, within Psest_0358 at 384.815 kb on - strand, within Psest_0358 at 384.922 kb on + strand, within Psest_0358 at 384.922 kb on + strand, within Psest_0358 at 384.922 kb on + strand, within Psest_0358 at 384.922 kb on + strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.923 kb on - strand, within Psest_0358 at 384.949 kb on + strand, within Psest_0358 at 384.949 kb on + strand, within Psest_0358 at 384.950 kb on - strand, within Psest_0358 at 384.950 kb on - strand, within Psest_0358 at 384.950 kb on - strand, within Psest_0358 at 384.959 kb on - strand, within Psest_0358 at 384.959 kb on - strand, within Psest_0358 at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.285 kb on + strand at 385.286 kb on - strand at 385.286 kb on - strand at 385.286 kb on - strand at 385.286 kb on - strand at 385.286 kb on - strand at 385.442 kb on - strand at 385.470 kb on + strand at 385.470 kb on + strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.497 kb on + strand at 385.506 kb on + strand at 385.520 kb on + strand at 385.521 kb on - strand at 386.190 kb on + strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.016 mg/ml remove 382,844 + -0.1 382,938 - +2.2 382,950 + +4.0 382,950 + -0.5 382,950 + -1.2 382,951 - -2.0 383,027 + +1.8 383,027 + +0.7 383,224 - Psest_0357 0.19 +0.5 383,224 - Psest_0357 0.19 +0.3 383,224 - Psest_0357 0.19 -2.9 383,394 - Psest_0357 0.42 +0.7 383,394 - Psest_0357 0.42 -0.9 383,541 - Psest_0357 0.61 -0.9 383,780 + -2.0 383,780 + -0.5 383,780 + +1.7 383,780 + -1.2 383,780 + -0.4 383,781 - -0.9 383,781 - +1.5 383,781 - -0.1 383,781 - +0.8 383,781 - +1.5 383,781 - +0.4 383,781 - -0.3 383,781 - -0.3 383,820 + -1.1 383,828 + -0.7 383,829 - +2.3 383,829 - -0.1 383,829 - -1.2 383,829 - +1.5 383,829 - -0.1 383,829 - +1.6 383,872 + -0.1 383,872 + -1.2 383,872 + +0.2 383,872 + +0.2 383,873 - -0.7 383,873 - -1.6 383,873 - +1.1 383,873 - +2.7 384,094 + Psest_0358 0.16 -0.9 384,232 + Psest_0358 0.24 +0.8 384,232 + Psest_0358 0.24 -1.9 384,232 + Psest_0358 0.24 +0.8 384,233 - Psest_0358 0.25 +0.1 384,233 - Psest_0358 0.25 -0.5 384,233 - Psest_0358 0.25 -0.5 384,233 - Psest_0358 0.25 +0.8 384,265 + Psest_0358 0.27 -1.1 384,265 + Psest_0358 0.27 +0.2 384,266 - Psest_0358 0.27 -1.0 384,266 - Psest_0358 0.27 +2.0 384,266 - Psest_0358 0.27 -0.9 384,266 - Psest_0358 0.27 -0.8 384,266 - Psest_0358 0.27 +1.1 384,266 - Psest_0358 0.27 +0.9 384,266 - Psest_0358 0.27 -1.7 384,266 - Psest_0358 0.27 -1.0 384,266 - Psest_0358 0.27 -2.8 384,266 - Psest_0358 0.27 -0.4 384,269 - Psest_0358 0.27 +0.3 384,280 + Psest_0358 0.27 -0.8 384,281 - Psest_0358 0.28 -2.4 384,281 - Psest_0358 0.28 +1.4 384,281 - Psest_0358 0.28 -0.1 384,281 - Psest_0358 0.28 -1.3 384,281 - Psest_0358 0.28 -2.1 384,281 - Psest_0358 0.28 +1.0 384,281 - Psest_0358 0.28 +0.8 384,352 + Psest_0358 0.32 -0.3 384,368 - Psest_0358 0.33 -1.2 384,397 + Psest_0358 0.35 +0.2 384,397 + Psest_0358 0.35 +0.8 384,398 - Psest_0358 0.35 -0.7 384,398 - Psest_0358 0.35 -0.7 384,398 - Psest_0358 0.35 +0.7 384,401 - Psest_0358 0.35 +0.7 384,401 - Psest_0358 0.35 +0.5 384,481 + Psest_0358 0.40 +1.6 384,506 - Psest_0358 0.42 -0.2 384,506 - Psest_0358 0.42 -1.1 384,814 + Psest_0358 0.61 -0.4 384,814 + Psest_0358 0.61 +0.2 384,814 + Psest_0358 0.61 -1.6 384,815 - Psest_0358 0.61 -2.3 384,815 - Psest_0358 0.61 -0.0 384,815 - Psest_0358 0.61 -1.6 384,922 + Psest_0358 0.67 -1.7 384,922 + Psest_0358 0.67 -2.0 384,922 + Psest_0358 0.67 -3.1 384,922 + Psest_0358 0.67 -0.3 384,923 - Psest_0358 0.68 -0.9 384,923 - Psest_0358 0.68 -0.2 384,923 - Psest_0358 0.68 -0.8 384,923 - Psest_0358 0.68 +0.7 384,923 - Psest_0358 0.68 -0.5 384,923 - Psest_0358 0.68 -0.1 384,923 - Psest_0358 0.68 -0.0 384,923 - Psest_0358 0.68 +1.0 384,923 - Psest_0358 0.68 -1.3 384,949 + Psest_0358 0.69 +0.2 384,949 + Psest_0358 0.69 -1.2 384,950 - Psest_0358 0.69 -0.6 384,950 - Psest_0358 0.69 -1.0 384,950 - Psest_0358 0.69 +0.5 384,959 - Psest_0358 0.70 -0.3 384,959 - Psest_0358 0.70 -0.3 385,285 + +1.2 385,285 + -0.5 385,285 + -1.3 385,285 + +1.4 385,285 + -0.5 385,285 + -0.5 385,285 + -0.5 385,285 + +0.9 385,286 - +0.2 385,286 - -0.7 385,286 - +1.0 385,286 - +1.5 385,286 - +0.7 385,442 - -1.8 385,470 + -0.1 385,470 + +1.3 385,471 - -0.3 385,471 - +1.1 385,471 - +0.0 385,471 - +2.5 385,497 + -0.7 385,506 + -1.0 385,520 + -0.1 385,521 - +0.1 386,190 + Psest_0359 0.84 -1.3 386,191 - Psest_0359 0.84 -0.4 386,191 - Psest_0359 0.84 -0.2 386,191 - Psest_0359 0.84 +0.1 386,191 - Psest_0359 0.84 -1.1
Or see this region's nucleotide sequence