Experiment: Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3474 and Psest_3475 overlap by 4 nucleotides Psest_3475 and Psest_3476 are separated by 50 nucleotides Psest_3476 and Psest_3477 overlap by 7 nucleotides
Psest_3474: Psest_3474 - Short-chain dehydrogenases of various substrate specificities, at 3,643,886 to 3,644,719
_3474
Psest_3475: Psest_3475 - hypothetical protein, at 3,644,716 to 3,645,366
_3475
Psest_3476: Psest_3476 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 3,645,417 to 3,646,076
_3476
Psest_3477: Psest_3477 - Signal transduction histidine kinase, at 3,646,070 to 3,647,509
_3477
Position (kb)
3645
3646
3647 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3644.586 kb on + strand, within Psest_3474 at 3644.839 kb on + strand, within Psest_3475 at 3644.840 kb on - strand, within Psest_3475 at 3644.840 kb on - strand, within Psest_3475 at 3644.840 kb on - strand, within Psest_3475 at 3644.840 kb on - strand, within Psest_3475 at 3644.937 kb on + strand, within Psest_3475 at 3644.938 kb on - strand, within Psest_3475 at 3645.074 kb on - strand, within Psest_3475 at 3645.075 kb on + strand, within Psest_3475 at 3645.094 kb on + strand, within Psest_3475 at 3645.095 kb on - strand, within Psest_3475 at 3645.095 kb on - strand, within Psest_3475 at 3645.095 kb on - strand, within Psest_3475 at 3645.199 kb on + strand, within Psest_3475 at 3645.199 kb on + strand, within Psest_3475 at 3645.199 kb on + strand, within Psest_3475 at 3645.199 kb on + strand, within Psest_3475 at 3645.199 kb on + strand, within Psest_3475 at 3645.199 kb on + strand, within Psest_3475 at 3645.199 kb on + strand, within Psest_3475 at 3645.200 kb on - strand, within Psest_3475 at 3645.200 kb on - strand, within Psest_3475 at 3645.236 kb on - strand, within Psest_3475 at 3645.844 kb on - strand, within Psest_3476 at 3645.951 kb on + strand, within Psest_3476 at 3646.334 kb on + strand, within Psest_3477 at 3646.361 kb on + strand, within Psest_3477 at 3646.361 kb on + strand, within Psest_3477 at 3646.361 kb on + strand, within Psest_3477 at 3646.362 kb on - strand, within Psest_3477 at 3646.362 kb on - strand, within Psest_3477
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.016 mg/ml remove 3,644,586 + Psest_3474 0.84 -2.3 3,644,839 + Psest_3475 0.19 -0.4 3,644,840 - Psest_3475 0.19 -1.0 3,644,840 - Psest_3475 0.19 +1.6 3,644,840 - Psest_3475 0.19 +0.1 3,644,840 - Psest_3475 0.19 +0.8 3,644,937 + Psest_3475 0.34 +1.2 3,644,938 - Psest_3475 0.34 +1.0 3,645,074 - Psest_3475 0.55 -0.2 3,645,075 + Psest_3475 0.55 +0.4 3,645,094 + Psest_3475 0.58 +1.2 3,645,095 - Psest_3475 0.58 -1.5 3,645,095 - Psest_3475 0.58 +1.5 3,645,095 - Psest_3475 0.58 -0.3 3,645,199 + Psest_3475 0.74 +0.8 3,645,199 + Psest_3475 0.74 +2.0 3,645,199 + Psest_3475 0.74 -0.3 3,645,199 + Psest_3475 0.74 +3.4 3,645,199 + Psest_3475 0.74 -0.3 3,645,199 + Psest_3475 0.74 -1.7 3,645,199 + Psest_3475 0.74 +1.5 3,645,200 - Psest_3475 0.74 +1.6 3,645,200 - Psest_3475 0.74 -0.2 3,645,236 - Psest_3475 0.80 +0.4 3,645,844 - Psest_3476 0.65 +2.3 3,645,951 + Psest_3476 0.81 +0.8 3,646,334 + Psest_3477 0.18 -1.8 3,646,361 + Psest_3477 0.20 +0.8 3,646,361 + Psest_3477 0.20 +0.4 3,646,361 + Psest_3477 0.20 +1.1 3,646,362 - Psest_3477 0.20 -1.0 3,646,362 - Psest_3477 0.20 -1.0
Or see this region's nucleotide sequence