Experiment: Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2673 and Psest_2674 are separated by 5 nucleotides Psest_2674 and Psest_2675 are separated by 136 nucleotides
Psest_2673: Psest_2673 - Arabinose efflux permease, at 2,861,217 to 2,862,524
_2673
Psest_2674: Psest_2674 - Protein chain release factor B, at 2,862,530 to 2,862,943
_2674
Psest_2675: Psest_2675 - Predicted membrane-bound metal-dependent hydrolases, at 2,863,080 to 2,864,123
_2675
Position (kb)
2862
2863 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2861.550 kb on + strand, within Psest_2673 at 2861.550 kb on + strand, within Psest_2673 at 2861.550 kb on + strand, within Psest_2673 at 2861.550 kb on + strand, within Psest_2673 at 2861.550 kb on + strand, within Psest_2673 at 2861.550 kb on + strand, within Psest_2673 at 2861.550 kb on + strand, within Psest_2673 at 2861.550 kb on + strand, within Psest_2673 at 2861.550 kb on + strand, within Psest_2673 at 2861.551 kb on - strand, within Psest_2673 at 2861.551 kb on - strand, within Psest_2673 at 2861.551 kb on - strand, within Psest_2673 at 2861.619 kb on + strand, within Psest_2673 at 2861.619 kb on + strand, within Psest_2673 at 2861.619 kb on + strand, within Psest_2673 at 2861.619 kb on + strand, within Psest_2673 at 2861.620 kb on - strand, within Psest_2673 at 2861.620 kb on - strand, within Psest_2673 at 2861.620 kb on - strand, within Psest_2673 at 2861.620 kb on - strand, within Psest_2673 at 2861.620 kb on - strand, within Psest_2673 at 2861.620 kb on - strand, within Psest_2673 at 2861.886 kb on + strand, within Psest_2673 at 2861.886 kb on + strand, within Psest_2673 at 2861.886 kb on + strand, within Psest_2673 at 2861.887 kb on - strand, within Psest_2673 at 2861.936 kb on + strand, within Psest_2673 at 2861.937 kb on - strand, within Psest_2673 at 2861.937 kb on - strand, within Psest_2673 at 2862.010 kb on + strand, within Psest_2673 at 2862.011 kb on - strand, within Psest_2673 at 2862.126 kb on + strand, within Psest_2673 at 2862.126 kb on + strand, within Psest_2673 at 2862.126 kb on + strand, within Psest_2673 at 2862.127 kb on - strand, within Psest_2673 at 2862.127 kb on - strand, within Psest_2673 at 2862.127 kb on - strand, within Psest_2673 at 2862.318 kb on + strand, within Psest_2673 at 2862.318 kb on + strand, within Psest_2673 at 2862.318 kb on + strand, within Psest_2673 at 2862.318 kb on + strand, within Psest_2673 at 2862.318 kb on + strand, within Psest_2673 at 2862.318 kb on + strand, within Psest_2673 at 2862.318 kb on + strand, within Psest_2673 at 2862.318 kb on + strand, within Psest_2673 at 2862.318 kb on + strand, within Psest_2673 at 2862.319 kb on - strand, within Psest_2673 at 2862.344 kb on - strand, within Psest_2673 at 2862.444 kb on - strand at 2862.531 kb on + strand at 2862.532 kb on - strand at 2862.534 kb on + strand at 2862.535 kb on - strand at 2862.789 kb on + strand, within Psest_2674 at 2862.789 kb on + strand, within Psest_2674 at 2862.789 kb on + strand, within Psest_2674 at 2862.789 kb on + strand, within Psest_2674 at 2862.790 kb on - strand, within Psest_2674 at 2862.827 kb on + strand, within Psest_2674 at 2862.827 kb on + strand, within Psest_2674 at 2862.827 kb on + strand, within Psest_2674 at 2862.827 kb on + strand, within Psest_2674 at 2862.827 kb on + strand, within Psest_2674 at 2862.828 kb on - strand, within Psest_2674 at 2862.828 kb on - strand, within Psest_2674 at 2863.053 kb on + strand at 2863.054 kb on - strand at 2863.213 kb on - strand, within Psest_2675 at 2863.239 kb on + strand, within Psest_2675 at 2863.239 kb on + strand, within Psest_2675 at 2863.239 kb on + strand, within Psest_2675 at 2863.239 kb on + strand, within Psest_2675 at 2863.239 kb on + strand, within Psest_2675 at 2863.407 kb on + strand, within Psest_2675 at 2863.408 kb on - strand, within Psest_2675 at 2863.462 kb on + strand, within Psest_2675 at 2863.463 kb on - strand, within Psest_2675 at 2863.556 kb on + strand, within Psest_2675 at 2863.557 kb on - strand, within Psest_2675 at 2863.561 kb on - strand, within Psest_2675 at 2863.584 kb on + strand, within Psest_2675 at 2863.737 kb on + strand, within Psest_2675 at 2863.737 kb on + strand, within Psest_2675 at 2863.737 kb on + strand, within Psest_2675 at 2863.740 kb on + strand, within Psest_2675 at 2863.741 kb on - strand, within Psest_2675 at 2863.741 kb on - strand, within Psest_2675
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.016 mg/ml remove 2,861,550 + Psest_2673 0.25 -0.4 2,861,550 + Psest_2673 0.25 +2.3 2,861,550 + Psest_2673 0.25 -1.0 2,861,550 + Psest_2673 0.25 +0.4 2,861,550 + Psest_2673 0.25 -1.9 2,861,550 + Psest_2673 0.25 +0.2 2,861,550 + Psest_2673 0.25 +0.7 2,861,550 + Psest_2673 0.25 -0.7 2,861,550 + Psest_2673 0.25 +0.3 2,861,551 - Psest_2673 0.26 +1.7 2,861,551 - Psest_2673 0.26 -1.2 2,861,551 - Psest_2673 0.26 +0.9 2,861,619 + Psest_2673 0.31 -0.2 2,861,619 + Psest_2673 0.31 -1.2 2,861,619 + Psest_2673 0.31 -0.6 2,861,619 + Psest_2673 0.31 -0.3 2,861,620 - Psest_2673 0.31 -3.0 2,861,620 - Psest_2673 0.31 +1.1 2,861,620 - Psest_2673 0.31 -1.4 2,861,620 - Psest_2673 0.31 +0.5 2,861,620 - Psest_2673 0.31 -1.0 2,861,620 - Psest_2673 0.31 -0.3 2,861,886 + Psest_2673 0.51 -0.3 2,861,886 + Psest_2673 0.51 -0.6 2,861,886 + Psest_2673 0.51 -0.6 2,861,887 - Psest_2673 0.51 -0.9 2,861,936 + Psest_2673 0.55 -0.7 2,861,937 - Psest_2673 0.55 +1.6 2,861,937 - Psest_2673 0.55 -1.7 2,862,010 + Psest_2673 0.61 +2.3 2,862,011 - Psest_2673 0.61 -1.2 2,862,126 + Psest_2673 0.69 -0.8 2,862,126 + Psest_2673 0.69 -0.2 2,862,126 + Psest_2673 0.69 +0.2 2,862,127 - Psest_2673 0.70 +0.7 2,862,127 - Psest_2673 0.70 -0.5 2,862,127 - Psest_2673 0.70 -0.7 2,862,318 + Psest_2673 0.84 -0.0 2,862,318 + Psest_2673 0.84 -0.6 2,862,318 + Psest_2673 0.84 +1.0 2,862,318 + Psest_2673 0.84 -0.5 2,862,318 + Psest_2673 0.84 +0.5 2,862,318 + Psest_2673 0.84 -3.3 2,862,318 + Psest_2673 0.84 +0.3 2,862,318 + Psest_2673 0.84 +0.8 2,862,318 + Psest_2673 0.84 +0.5 2,862,319 - Psest_2673 0.84 +1.1 2,862,344 - Psest_2673 0.86 +0.2 2,862,444 - +1.3 2,862,531 + +1.6 2,862,532 - +0.1 2,862,534 + -0.6 2,862,535 - -0.9 2,862,789 + Psest_2674 0.63 -1.1 2,862,789 + Psest_2674 0.63 +0.6 2,862,789 + Psest_2674 0.63 +0.5 2,862,789 + Psest_2674 0.63 +0.4 2,862,790 - Psest_2674 0.63 -0.1 2,862,827 + Psest_2674 0.72 +1.0 2,862,827 + Psest_2674 0.72 +2.3 2,862,827 + Psest_2674 0.72 -0.3 2,862,827 + Psest_2674 0.72 +1.1 2,862,827 + Psest_2674 0.72 +1.8 2,862,828 - Psest_2674 0.72 +1.6 2,862,828 - Psest_2674 0.72 +1.7 2,863,053 + -0.0 2,863,054 - -1.2 2,863,213 - Psest_2675 0.13 +1.3 2,863,239 + Psest_2675 0.15 -0.7 2,863,239 + Psest_2675 0.15 +3.0 2,863,239 + Psest_2675 0.15 +1.8 2,863,239 + Psest_2675 0.15 +1.5 2,863,239 + Psest_2675 0.15 +1.0 2,863,407 + Psest_2675 0.31 +1.3 2,863,408 - Psest_2675 0.31 +0.3 2,863,462 + Psest_2675 0.37 +0.6 2,863,463 - Psest_2675 0.37 -0.8 2,863,556 + Psest_2675 0.46 +0.7 2,863,557 - Psest_2675 0.46 +0.1 2,863,561 - Psest_2675 0.46 +0.1 2,863,584 + Psest_2675 0.48 +1.1 2,863,737 + Psest_2675 0.63 -0.1 2,863,737 + Psest_2675 0.63 +0.4 2,863,737 + Psest_2675 0.63 +0.7 2,863,740 + Psest_2675 0.63 -2.0 2,863,741 - Psest_2675 0.63 +0.5 2,863,741 - Psest_2675 0.63 -0.6
Or see this region's nucleotide sequence