Experiment: Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1737 and Psest_1738 are separated by 15 nucleotides Psest_1738 and Psest_1739 are separated by 91 nucleotides Psest_1739 and Psest_1740 are separated by 17 nucleotides
Psest_1737: Psest_1737 - flagellar biosynthesis protein FlhA, at 1,840,957 to 1,843,077
_1737
Psest_1738: Psest_1738 - flagellar biosynthetic protein FlhF, at 1,843,093 to 1,844,382
_1738
Psest_1739: Psest_1739 - ATPases involved in chromosome partitioning, at 1,844,474 to 1,845,301
_1739
Psest_1740: Psest_1740 - RNA polymerase sigma factor, FliA/WhiG family, at 1,845,319 to 1,846,044
_1740
Position (kb)
1843
1844
1845 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1842.412 kb on + strand, within Psest_1737 at 1842.413 kb on - strand, within Psest_1737 at 1842.413 kb on - strand, within Psest_1737 at 1843.794 kb on - strand, within Psest_1738 at 1843.801 kb on + strand, within Psest_1738 at 1843.801 kb on + strand, within Psest_1738 at 1844.056 kb on + strand, within Psest_1738 at 1844.056 kb on + strand, within Psest_1738 at 1844.056 kb on + strand, within Psest_1738 at 1844.057 kb on - strand, within Psest_1738 at 1844.113 kb on + strand, within Psest_1738 at 1844.139 kb on + strand, within Psest_1738 at 1844.139 kb on + strand, within Psest_1738 at 1844.180 kb on + strand, within Psest_1738 at 1844.180 kb on + strand, within Psest_1738 at 1844.218 kb on + strand, within Psest_1738 at 1844.337 kb on + strand at 1844.459 kb on + strand at 1844.459 kb on + strand at 1844.459 kb on + strand at 1844.459 kb on + strand at 1844.461 kb on + strand at 1844.461 kb on + strand at 1844.461 kb on + strand at 1844.461 kb on + strand at 1844.461 kb on + strand at 1844.461 kb on + strand at 1844.461 kb on + strand at 1845.319 kb on - strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.322 kb on + strand at 1845.323 kb on - strand at 1845.323 kb on - strand at 1845.323 kb on - strand at 1845.323 kb on - strand at 1845.323 kb on - strand at 1845.323 kb on - strand at 1845.323 kb on - strand at 1845.323 kb on - strand at 1845.323 kb on - strand at 1845.323 kb on - strand at 1845.323 kb on - strand at 1845.323 kb on - strand at 1845.326 kb on - strand at 1845.326 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.016 mg/ml remove 1,842,412 + Psest_1737 0.69 +0.9 1,842,413 - Psest_1737 0.69 +2.9 1,842,413 - Psest_1737 0.69 +0.8 1,843,794 - Psest_1738 0.54 -1.9 1,843,801 + Psest_1738 0.55 +1.1 1,843,801 + Psest_1738 0.55 +0.0 1,844,056 + Psest_1738 0.75 +3.0 1,844,056 + Psest_1738 0.75 +0.9 1,844,056 + Psest_1738 0.75 +1.2 1,844,057 - Psest_1738 0.75 -0.3 1,844,113 + Psest_1738 0.79 +2.0 1,844,139 + Psest_1738 0.81 +0.9 1,844,139 + Psest_1738 0.81 +1.3 1,844,180 + Psest_1738 0.84 +2.6 1,844,180 + Psest_1738 0.84 +0.7 1,844,218 + Psest_1738 0.87 +3.1 1,844,337 + -2.1 1,844,459 + -0.3 1,844,459 + +0.4 1,844,459 + -0.2 1,844,459 + +0.5 1,844,461 + +0.0 1,844,461 + -1.9 1,844,461 + -0.8 1,844,461 + -0.1 1,844,461 + -1.0 1,844,461 + -0.2 1,844,461 + -0.8 1,845,319 - +0.9 1,845,322 + +2.2 1,845,322 + +2.5 1,845,322 + +1.8 1,845,322 + +4.0 1,845,322 + +1.5 1,845,322 + +4.3 1,845,322 + +1.7 1,845,322 + +1.4 1,845,322 + +1.2 1,845,322 + +1.4 1,845,322 + +1.6 1,845,322 + +3.5 1,845,322 + +2.3 1,845,322 + +0.7 1,845,323 - +1.1 1,845,323 - +2.4 1,845,323 - +1.7 1,845,323 - +3.1 1,845,323 - +2.5 1,845,323 - +2.2 1,845,323 - +2.6 1,845,323 - +1.1 1,845,323 - +0.7 1,845,323 - +1.8 1,845,323 - +2.9 1,845,323 - +0.8 1,845,326 - +4.1 1,845,326 - +3.3
Or see this region's nucleotide sequence