Experiment: Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1729 and Psest_1730 are separated by 40 nucleotides Psest_1730 and Psest_1731 are separated by 1 nucleotides Psest_1731 and Psest_1732 overlap by 1 nucleotides Psest_1732 and Psest_1733 are separated by 12 nucleotides Psest_1733 and Psest_1734 are separated by 6 nucleotides
Psest_1729: Psest_1729 - flagellar motor switch protein FliM, at 1,835,251 to 1,836,222
_1729
Psest_1730: Psest_1730 - flagellar motor switch protein FliN, at 1,836,263 to 1,836,736
_1730
Psest_1731: Psest_1731 - flagellar biosynthetic protein FliO, at 1,836,738 to 1,837,157
_1731
Psest_1732: Psest_1732 - flagellar biosynthetic protein FliP, at 1,837,157 to 1,837,933
_1732
Psest_1733: Psest_1733 - flagellar biosynthetic protein FliQ, at 1,837,946 to 1,838,215
_1733
Psest_1734: Psest_1734 - flagellar biosynthetic protein FliR, at 1,838,222 to 1,838,998
_1734
Position (kb)
1837
1838 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1836.233 kb on + strand at 1836.234 kb on - strand at 1836.815 kb on + strand, within Psest_1731 at 1837.174 kb on - strand at 1837.269 kb on + strand, within Psest_1732 at 1837.276 kb on - strand, within Psest_1732 at 1837.280 kb on - strand, within Psest_1732 at 1837.280 kb on - strand, within Psest_1732 at 1837.539 kb on - strand, within Psest_1732 at 1837.539 kb on - strand, within Psest_1732 at 1837.661 kb on - strand, within Psest_1732 at 1837.661 kb on - strand, within Psest_1732 at 1837.661 kb on - strand, within Psest_1732 at 1837.931 kb on + strand at 1838.164 kb on + strand, within Psest_1733 at 1838.171 kb on + strand, within Psest_1733 at 1838.171 kb on + strand, within Psest_1733 at 1838.172 kb on - strand, within Psest_1733 at 1838.227 kb on - strand at 1838.354 kb on + strand, within Psest_1734 at 1838.355 kb on - strand, within Psest_1734 at 1838.614 kb on + strand, within Psest_1734 at 1838.614 kb on + strand, within Psest_1734 at 1838.614 kb on + strand, within Psest_1734 at 1838.615 kb on - strand, within Psest_1734 at 1838.615 kb on - strand, within Psest_1734 at 1838.615 kb on - strand, within Psest_1734 at 1838.615 kb on - strand, within Psest_1734 at 1838.615 kb on - strand, within Psest_1734 at 1838.658 kb on + strand, within Psest_1734 at 1838.659 kb on - strand, within Psest_1734 at 1838.858 kb on - strand, within Psest_1734
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.016 mg/ml remove 1,836,233 + -1.9 1,836,234 - +2.1 1,836,815 + Psest_1731 0.18 +2.2 1,837,174 - +2.0 1,837,269 + Psest_1732 0.14 +3.7 1,837,276 - Psest_1732 0.15 +1.8 1,837,280 - Psest_1732 0.16 -0.4 1,837,280 - Psest_1732 0.16 -0.4 1,837,539 - Psest_1732 0.49 +1.5 1,837,539 - Psest_1732 0.49 +2.1 1,837,661 - Psest_1732 0.65 +1.7 1,837,661 - Psest_1732 0.65 +3.2 1,837,661 - Psest_1732 0.65 +1.2 1,837,931 + -1.0 1,838,164 + Psest_1733 0.81 +1.2 1,838,171 + Psest_1733 0.83 +0.9 1,838,171 + Psest_1733 0.83 -0.2 1,838,172 - Psest_1733 0.84 +1.7 1,838,227 - +0.3 1,838,354 + Psest_1734 0.17 +1.6 1,838,355 - Psest_1734 0.17 +2.9 1,838,614 + Psest_1734 0.50 +4.1 1,838,614 + Psest_1734 0.50 +1.8 1,838,614 + Psest_1734 0.50 +3.1 1,838,615 - Psest_1734 0.51 +1.9 1,838,615 - Psest_1734 0.51 +1.5 1,838,615 - Psest_1734 0.51 +1.3 1,838,615 - Psest_1734 0.51 +0.5 1,838,615 - Psest_1734 0.51 +2.4 1,838,658 + Psest_1734 0.56 +1.0 1,838,659 - Psest_1734 0.56 +1.0 1,838,858 - Psest_1734 0.82 +2.3
Or see this region's nucleotide sequence