Experiment: Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1654 and Psest_1655 are separated by 334 nucleotides Psest_1655 and Psest_1656 are separated by 3 nucleotides
Psest_1654: Psest_1654 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 1,763,086 to 1,764,537
_1654
Psest_1655: Psest_1655 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit, at 1,764,872 to 1,766,209
_1655
Psest_1656: Psest_1656 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit, at 1,766,213 to 1,767,424
_1656
Position (kb)
1764
1765
1766
1767 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1764.729 kb on + strand at 1764.729 kb on + strand at 1764.784 kb on + strand at 1764.807 kb on + strand at 1764.880 kb on + strand at 1765.877 kb on + strand, within Psest_1655 at 1765.877 kb on + strand, within Psest_1655 at 1765.877 kb on + strand, within Psest_1655 at 1765.877 kb on + strand, within Psest_1655 at 1765.877 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.919 kb on + strand, within Psest_1655 at 1765.920 kb on - strand, within Psest_1655 at 1765.920 kb on - strand, within Psest_1655 at 1765.920 kb on - strand, within Psest_1655 at 1765.920 kb on - strand, within Psest_1655 at 1765.921 kb on + strand, within Psest_1655 at 1766.135 kb on + strand at 1766.135 kb on + strand at 1766.135 kb on + strand at 1766.135 kb on + strand at 1766.270 kb on + strand at 1766.401 kb on + strand, within Psest_1656 at 1766.576 kb on + strand, within Psest_1656 at 1766.576 kb on + strand, within Psest_1656 at 1766.591 kb on + strand, within Psest_1656 at 1766.591 kb on + strand, within Psest_1656 at 1767.172 kb on + strand, within Psest_1656 at 1767.172 kb on + strand, within Psest_1656
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.016 mg/ml remove 1,764,729 + +0.4 1,764,729 + -1.5 1,764,784 + -0.4 1,764,807 + +1.2 1,764,880 + -1.8 1,765,877 + Psest_1655 0.75 +3.3 1,765,877 + Psest_1655 0.75 +0.9 1,765,877 + Psest_1655 0.75 +0.7 1,765,877 + Psest_1655 0.75 +0.8 1,765,877 + Psest_1655 0.75 -0.8 1,765,919 + Psest_1655 0.78 +0.2 1,765,919 + Psest_1655 0.78 +3.7 1,765,919 + Psest_1655 0.78 -1.1 1,765,919 + Psest_1655 0.78 +1.6 1,765,919 + Psest_1655 0.78 +0.9 1,765,919 + Psest_1655 0.78 -2.6 1,765,919 + Psest_1655 0.78 -1.8 1,765,919 + Psest_1655 0.78 -1.1 1,765,919 + Psest_1655 0.78 +0.1 1,765,919 + Psest_1655 0.78 +1.8 1,765,919 + Psest_1655 0.78 +0.2 1,765,919 + Psest_1655 0.78 -2.5 1,765,920 - Psest_1655 0.78 +1.8 1,765,920 - Psest_1655 0.78 +2.2 1,765,920 - Psest_1655 0.78 -0.6 1,765,920 - Psest_1655 0.78 +1.8 1,765,921 + Psest_1655 0.78 +2.4 1,766,135 + -0.8 1,766,135 + +1.8 1,766,135 + -0.6 1,766,135 + -0.3 1,766,270 + -0.8 1,766,401 + Psest_1656 0.16 +2.7 1,766,576 + Psest_1656 0.30 -1.9 1,766,576 + Psest_1656 0.30 +1.5 1,766,591 + Psest_1656 0.31 +0.2 1,766,591 + Psest_1656 0.31 -1.6 1,767,172 + Psest_1656 0.79 -1.8 1,767,172 + Psest_1656 0.79 -1.1
Or see this region's nucleotide sequence