Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0142

Experiment: Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0141 and Psest_0142 are separated by 149 nucleotidesPsest_0142 and Psest_0143 are separated by 223 nucleotidesPsest_0143 and Psest_0144 are separated by 92 nucleotidesPsest_0144 and Psest_0145 overlap by 4 nucleotides Psest_0141: Psest_0141 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 141,252 to 142,019 _0141 Psest_0142: Psest_0142 - Micrococcal nuclease (thermonuclease) homologs, at 142,169 to 142,651 _0142 Psest_0143: Psest_0143 - tRNA_Phe_GAA, at 142,875 to 142,950 _0143 Psest_0144: Psest_0144 - Fe-S cluster protector protein, at 143,043 to 143,315 _0144 Psest_0145: Psest_0145 - A/G-specific adenine glycosylase, at 143,312 to 144,379 _0145 Position (kb) 142 143Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 141.182 kb on - strandat 141.385 kb on + strand, within Psest_0141at 141.386 kb on - strand, within Psest_0141at 141.386 kb on - strand, within Psest_0141at 141.610 kb on + strand, within Psest_0141at 141.679 kb on + strand, within Psest_0141at 141.714 kb on + strand, within Psest_0141at 141.715 kb on - strand, within Psest_0141at 141.715 kb on - strand, within Psest_0141at 141.887 kb on + strand, within Psest_0141at 141.968 kb on - strandat 142.011 kb on + strandat 142.025 kb on + strandat 142.026 kb on - strandat 142.026 kb on - strandat 142.026 kb on - strandat 142.123 kb on - strandat 142.288 kb on + strand, within Psest_0142at 142.436 kb on + strand, within Psest_0142at 142.436 kb on + strand, within Psest_0142at 142.436 kb on + strand, within Psest_0142at 142.436 kb on + strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.437 kb on - strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.588 kb on + strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.589 kb on - strand, within Psest_0142at 142.592 kb on + strand, within Psest_0142at 142.592 kb on + strand, within Psest_0142at 142.592 kb on + strand, within Psest_0142at 142.592 kb on + strand, within Psest_0142at 142.592 kb on + strand, within Psest_0142at 142.592 kb on + strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.593 kb on - strand, within Psest_0142at 142.641 kb on + strandat 142.641 kb on + strandat 142.642 kb on - strandat 142.642 kb on - strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.847 kb on - strandat 142.847 kb on - strandat 143.058 kb on + strandat 143.059 kb on - strandat 143.059 kb on - strandat 143.062 kb on + strandat 143.062 kb on + strandat 143.062 kb on + strandat 143.063 kb on - strandat 143.063 kb on - strandat 143.063 kb on - strandat 143.080 kb on + strand, within Psest_0144at 143.080 kb on + strand, within Psest_0144at 143.080 kb on + strand, within Psest_0144at 143.080 kb on + strand, within Psest_0144at 143.224 kb on + strand, within Psest_0144at 143.224 kb on + strand, within Psest_0144at 143.224 kb on + strand, within Psest_0144at 143.224 kb on + strand, within Psest_0144at 143.224 kb on + strand, within Psest_0144at 143.224 kb on + strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.225 kb on - strand, within Psest_0144at 143.287 kb on + strand, within Psest_0144at 143.287 kb on + strand, within Psest_0144at 143.287 kb on + strand, within Psest_0144at 143.287 kb on + strand, within Psest_0144at 143.287 kb on + strand, within Psest_0144at 143.288 kb on - strandat 143.288 kb on - strandat 143.288 kb on - strandat 143.288 kb on - strandat 143.288 kb on - strandat 143.288 kb on - strandat 143.407 kb on + strandat 143.408 kb on - strandat 143.409 kb on + strandat 143.409 kb on + strandat 143.409 kb on + strandat 143.410 kb on - strandat 143.410 kb on - strandat 143.410 kb on - strandat 143.410 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.016 mg/ml
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141,182 - +0.1
141,385 + Psest_0141 0.17 +1.1
141,386 - Psest_0141 0.17 +1.2
141,386 - Psest_0141 0.17 -0.9
141,610 + Psest_0141 0.47 -0.2
141,679 + Psest_0141 0.56 -1.7
141,714 + Psest_0141 0.60 +1.0
141,715 - Psest_0141 0.60 -0.1
141,715 - Psest_0141 0.60 -1.1
141,887 + Psest_0141 0.83 +0.9
141,968 - -1.1
142,011 + -0.0
142,025 + -0.8
142,026 - +1.2
142,026 - +0.4
142,026 - +0.5
142,123 - +1.5
142,288 + Psest_0142 0.25 -0.1
142,436 + Psest_0142 0.55 +0.0
142,436 + Psest_0142 0.55 +0.1
142,436 + Psest_0142 0.55 +1.4
142,436 + Psest_0142 0.55 +1.1
142,437 - Psest_0142 0.55 -2.7
142,437 - Psest_0142 0.55 +1.2
142,437 - Psest_0142 0.55 +0.6
142,437 - Psest_0142 0.55 -0.2
142,437 - Psest_0142 0.55 +0.9
142,437 - Psest_0142 0.55 +1.8
142,437 - Psest_0142 0.55 +0.1
142,437 - Psest_0142 0.55 +1.0
142,437 - Psest_0142 0.55 +0.8
142,437 - Psest_0142 0.55 -0.8
142,437 - Psest_0142 0.55 +2.3
142,437 - Psest_0142 0.55 +0.9
142,437 - Psest_0142 0.55 +1.7
142,437 - Psest_0142 0.55 +0.1
142,588 + Psest_0142 0.87 +0.5
142,588 + Psest_0142 0.87 -0.4
142,588 + Psest_0142 0.87 +0.7
142,588 + Psest_0142 0.87 -0.8
142,588 + Psest_0142 0.87 -2.3
142,588 + Psest_0142 0.87 +2.1
142,588 + Psest_0142 0.87 -0.4
142,589 - Psest_0142 0.87 +1.6
142,589 - Psest_0142 0.87 +1.4
142,589 - Psest_0142 0.87 +0.9
142,589 - Psest_0142 0.87 +1.8
142,589 - Psest_0142 0.87 +0.5
142,589 - Psest_0142 0.87 +0.2
142,589 - Psest_0142 0.87 +0.0
142,589 - Psest_0142 0.87 -2.2
142,589 - Psest_0142 0.87 +0.3
142,589 - Psest_0142 0.87 +2.5
142,589 - Psest_0142 0.87 +1.4
142,589 - Psest_0142 0.87 -0.4
142,589 - Psest_0142 0.87 +0.1
142,592 + Psest_0142 0.88 -0.8
142,592 + Psest_0142 0.88 -0.4
142,592 + Psest_0142 0.88 -0.2
142,592 + Psest_0142 0.88 +0.3
142,592 + Psest_0142 0.88 +0.2
142,592 + Psest_0142 0.88 +0.2
142,593 - Psest_0142 0.88 +0.5
142,593 - Psest_0142 0.88 +0.5
142,593 - Psest_0142 0.88 +1.0
142,593 - Psest_0142 0.88 -0.7
142,593 - Psest_0142 0.88 -0.4
142,593 - Psest_0142 0.88 -3.6
142,593 - Psest_0142 0.88 +0.8
142,593 - Psest_0142 0.88 +0.1
142,593 - Psest_0142 0.88 +0.6
142,593 - Psest_0142 0.88 +1.0
142,593 - Psest_0142 0.88 +0.6
142,641 + +0.1
142,641 + -1.2
142,642 - +1.7
142,642 - -0.1
142,766 - +1.9
142,766 - +0.8
142,766 - -1.2
142,766 - +1.1
142,766 - -1.1
142,847 - +0.1
142,847 - +1.2
143,058 + -0.4
143,059 - -0.1
143,059 - +0.7
143,062 + +0.3
143,062 + +1.1
143,062 + +1.5
143,063 - +1.1
143,063 - -0.7
143,063 - +0.5
143,080 + Psest_0144 0.14 +1.8
143,080 + Psest_0144 0.14 -0.3
143,080 + Psest_0144 0.14 -0.8
143,080 + Psest_0144 0.14 +0.5
143,224 + Psest_0144 0.66 -0.6
143,224 + Psest_0144 0.66 +0.8
143,224 + Psest_0144 0.66 +0.4
143,224 + Psest_0144 0.66 -0.6
143,224 + Psest_0144 0.66 +2.2
143,224 + Psest_0144 0.66 -0.9
143,225 - Psest_0144 0.67 -0.8
143,225 - Psest_0144 0.67 -2.3
143,225 - Psest_0144 0.67 +0.1
143,225 - Psest_0144 0.67 +0.7
143,225 - Psest_0144 0.67 +0.5
143,225 - Psest_0144 0.67 +0.4
143,225 - Psest_0144 0.67 -0.2
143,225 - Psest_0144 0.67 -2.7
143,225 - Psest_0144 0.67 +0.3
143,225 - Psest_0144 0.67 -2.8
143,287 + Psest_0144 0.89 -1.2
143,287 + Psest_0144 0.89 -0.4
143,287 + Psest_0144 0.89 -0.2
143,287 + Psest_0144 0.89 -2.0
143,287 + Psest_0144 0.89 -1.1
143,288 - +0.8
143,288 - +0.7
143,288 - -1.6
143,288 - +0.0
143,288 - +0.6
143,288 - -1.8
143,407 + -0.7
143,408 - +0.9
143,409 + +0.2
143,409 + -1.2
143,409 + -0.6
143,410 - +0.3
143,410 - -0.2
143,410 - -0.8
143,410 - -2.1

Or see this region's nucleotide sequence