Experiment: Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0495 and Psest_0496 are separated by 164 nucleotides Psest_0496 and Psest_0497 are separated by 9 nucleotides Psest_0497 and Psest_0498 are separated by 9 nucleotides
Psest_0495: Psest_0495 - HDOD domain., at 549,397 to 550,911
_0495
Psest_0496: Psest_0496 - flagellar motor stator protein MotA, at 551,076 to 551,927
_0496
Psest_0497: Psest_0497 - Flagellar motor protein, at 551,937 to 552,917
_0497
Psest_0498: Psest_0498 - ribosome small subunit-dependent GTPase A, at 552,927 to 553,958
_0498
Position (kb) 551
552 Strain fitness (log2 ratio) -1
0
1
2 at 550.727 kb on - strand, within Psest_0495 at 550.892 kb on - strand at 551.069 kb on + strand at 551.069 kb on + strand at 551.070 kb on - strand at 551.070 kb on - strand at 551.075 kb on + strand at 551.075 kb on + strand at 551.075 kb on + strand at 551.075 kb on + strand at 551.076 kb on - strand at 551.293 kb on - strand, within Psest_0496 at 551.293 kb on - strand, within Psest_0496 at 551.293 kb on - strand, within Psest_0496 at 551.295 kb on + strand, within Psest_0496 at 551.295 kb on + strand, within Psest_0496 at 551.295 kb on + strand, within Psest_0496 at 551.320 kb on - strand, within Psest_0496 at 551.409 kb on + strand, within Psest_0496 at 551.409 kb on + strand, within Psest_0496 at 551.410 kb on - strand, within Psest_0496 at 551.410 kb on - strand, within Psest_0496 at 551.410 kb on - strand, within Psest_0496 at 551.457 kb on + strand, within Psest_0496 at 551.457 kb on + strand, within Psest_0496 at 551.458 kb on - strand, within Psest_0496 at 551.458 kb on - strand, within Psest_0496 at 551.458 kb on - strand, within Psest_0496 at 551.673 kb on + strand, within Psest_0496 at 551.725 kb on - strand, within Psest_0496 at 551.725 kb on - strand, within Psest_0496 at 551.725 kb on - strand, within Psest_0496 at 551.925 kb on + strand at 551.926 kb on - strand at 552.101 kb on + strand, within Psest_0497 at 552.101 kb on + strand, within Psest_0497 at 552.102 kb on - strand, within Psest_0497 at 552.112 kb on - strand, within Psest_0497 at 552.459 kb on + strand, within Psest_0497 at 552.459 kb on + strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.491 kb on + strand, within Psest_0497 at 552.492 kb on - strand, within Psest_0497 at 552.722 kb on + strand, within Psest_0497 at 552.826 kb on + strand at 552.838 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.016 mg/ml remove 550,727 - Psest_0495 0.88 +0.5 550,892 - -1.4 551,069 + -0.4 551,069 + -1.0 551,070 - -1.3 551,070 - +1.9 551,075 + -0.3 551,075 + -0.8 551,075 + -0.3 551,075 + +1.6 551,076 - +1.1 551,293 - Psest_0496 0.25 +2.0 551,293 - Psest_0496 0.25 +0.7 551,293 - Psest_0496 0.25 +2.1 551,295 + Psest_0496 0.26 +2.4 551,295 + Psest_0496 0.26 +0.3 551,295 + Psest_0496 0.26 +2.3 551,320 - Psest_0496 0.29 +2.3 551,409 + Psest_0496 0.39 -0.5 551,409 + Psest_0496 0.39 +1.1 551,410 - Psest_0496 0.39 +0.6 551,410 - Psest_0496 0.39 +1.7 551,410 - Psest_0496 0.39 -0.2 551,457 + Psest_0496 0.45 +1.1 551,457 + Psest_0496 0.45 +2.3 551,458 - Psest_0496 0.45 +0.2 551,458 - Psest_0496 0.45 +1.9 551,458 - Psest_0496 0.45 +1.4 551,673 + Psest_0496 0.70 +1.3 551,725 - Psest_0496 0.76 -0.3 551,725 - Psest_0496 0.76 +1.5 551,725 - Psest_0496 0.76 +0.6 551,925 + -0.5 551,926 - +2.1 552,101 + Psest_0497 0.17 +1.7 552,101 + Psest_0497 0.17 +0.4 552,102 - Psest_0497 0.17 +1.6 552,112 - Psest_0497 0.18 -0.1 552,459 + Psest_0497 0.53 +2.5 552,459 + Psest_0497 0.53 +2.3 552,460 - Psest_0497 0.53 +1.0 552,460 - Psest_0497 0.53 +2.1 552,460 - Psest_0497 0.53 +1.0 552,460 - Psest_0497 0.53 +0.6 552,491 + Psest_0497 0.56 +1.3 552,492 - Psest_0497 0.57 +1.5 552,722 + Psest_0497 0.80 +0.9 552,826 + -0.9 552,838 + +1.3
Or see this region's nucleotide sequence