Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4283

Experiment: Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4282 and Psest_4283 are separated by 150 nucleotidesPsest_4283 and Psest_4284 are separated by 264 nucleotides Psest_4282: Psest_4282 - spermidine/putrescine ABC transporter ATP-binding subunit, at 4,473,116 to 4,474,267 _4282 Psest_4283: Psest_4283 - Spermidine/putrescine-binding periplasmic protein, at 4,474,418 to 4,475,503 _4283 Psest_4284: Psest_4284 - Spermidine/putrescine-binding periplasmic protein, at 4,475,768 to 4,476,865 _4284 Position (kb) 4474 4475 4476Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4473.420 kb on + strand, within Psest_4282at 4473.420 kb on + strand, within Psest_4282at 4473.420 kb on + strand, within Psest_4282at 4473.420 kb on + strand, within Psest_4282at 4473.420 kb on + strand, within Psest_4282at 4473.420 kb on + strand, within Psest_4282at 4473.420 kb on + strand, within Psest_4282at 4473.420 kb on + strand, within Psest_4282at 4473.420 kb on + strand, within Psest_4282at 4473.420 kb on + strand, within Psest_4282at 4473.421 kb on - strand, within Psest_4282at 4473.421 kb on - strand, within Psest_4282at 4473.421 kb on - strand, within Psest_4282at 4473.546 kb on + strand, within Psest_4282at 4473.546 kb on + strand, within Psest_4282at 4473.546 kb on + strand, within Psest_4282at 4473.547 kb on - strand, within Psest_4282at 4473.547 kb on - strand, within Psest_4282at 4473.547 kb on - strand, within Psest_4282at 4473.547 kb on - strand, within Psest_4282at 4473.547 kb on - strand, within Psest_4282at 4473.960 kb on + strand, within Psest_4282at 4473.994 kb on - strand, within Psest_4282at 4474.069 kb on + strand, within Psest_4282at 4474.070 kb on - strand, within Psest_4282at 4474.070 kb on - strand, within Psest_4282at 4474.316 kb on + strandat 4474.316 kb on + strandat 4474.316 kb on + strandat 4474.316 kb on + strandat 4474.316 kb on + strandat 4474.316 kb on + strandat 4474.317 kb on - strandat 4474.317 kb on - strandat 4474.317 kb on - strandat 4474.317 kb on - strandat 4474.317 kb on - strandat 4474.317 kb on - strandat 4474.317 kb on - strandat 4474.317 kb on - strandat 4474.448 kb on - strandat 4474.494 kb on + strandat 4474.494 kb on + strandat 4474.494 kb on + strandat 4474.494 kb on + strandat 4474.494 kb on + strandat 4474.494 kb on + strandat 4474.495 kb on - strandat 4474.495 kb on - strandat 4474.495 kb on - strandat 4474.495 kb on - strandat 4474.599 kb on + strand, within Psest_4283at 4474.599 kb on + strand, within Psest_4283at 4474.599 kb on + strand, within Psest_4283at 4474.599 kb on + strand, within Psest_4283at 4474.600 kb on - strand, within Psest_4283at 4474.600 kb on - strand, within Psest_4283at 4474.619 kb on + strand, within Psest_4283at 4474.619 kb on + strand, within Psest_4283at 4474.619 kb on + strand, within Psest_4283at 4474.638 kb on + strand, within Psest_4283at 4474.638 kb on + strand, within Psest_4283at 4474.638 kb on + strand, within Psest_4283at 4474.638 kb on + strand, within Psest_4283at 4474.638 kb on + strand, within Psest_4283at 4474.638 kb on + strand, within Psest_4283at 4474.639 kb on - strand, within Psest_4283at 4474.639 kb on - strand, within Psest_4283at 4474.639 kb on - strand, within Psest_4283at 4474.639 kb on - strand, within Psest_4283at 4474.639 kb on - strand, within Psest_4283at 4474.639 kb on - strand, within Psest_4283at 4474.639 kb on - strand, within Psest_4283at 4474.639 kb on - strand, within Psest_4283at 4474.639 kb on - strand, within Psest_4283at 4474.639 kb on - strand, within Psest_4283at 4474.639 kb on - strand, within Psest_4283at 4474.820 kb on - strand, within Psest_4283at 4474.845 kb on + strand, within Psest_4283at 4474.845 kb on + strand, within Psest_4283at 4474.846 kb on - strand, within Psest_4283at 4474.846 kb on - strand, within Psest_4283at 4474.863 kb on + strand, within Psest_4283at 4474.864 kb on - strand, within Psest_4283at 4474.950 kb on + strand, within Psest_4283at 4474.950 kb on + strand, within Psest_4283at 4474.950 kb on + strand, within Psest_4283at 4474.951 kb on - strand, within Psest_4283at 4474.951 kb on - strand, within Psest_4283at 4474.951 kb on - strand, within Psest_4283at 4475.100 kb on + strand, within Psest_4283at 4475.100 kb on + strand, within Psest_4283at 4475.128 kb on - strand, within Psest_4283at 4475.406 kb on + strandat 4475.406 kb on + strandat 4475.406 kb on + strandat 4475.407 kb on - strandat 4475.407 kb on - strandat 4475.407 kb on - strandat 4475.407 kb on - strandat 4475.421 kb on + strandat 4475.421 kb on + strandat 4475.421 kb on + strandat 4475.421 kb on + strandat 4475.421 kb on + strandat 4475.421 kb on + strandat 4475.421 kb on + strandat 4475.421 kb on + strandat 4475.421 kb on + strandat 4475.421 kb on + strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.422 kb on - strandat 4475.731 kb on + strandat 4475.844 kb on + strandat 4475.844 kb on + strandat 4475.844 kb on + strandat 4475.845 kb on - strandat 4475.875 kb on - strandat 4475.875 kb on - strandat 4475.875 kb on - strandat 4475.949 kb on + strand, within Psest_4284at 4475.949 kb on + strand, within Psest_4284at 4475.949 kb on + strand, within Psest_4284at 4475.949 kb on + strand, within Psest_4284at 4475.949 kb on + strand, within Psest_4284at 4475.949 kb on + strand, within Psest_4284at 4475.949 kb on + strand, within Psest_4284at 4475.949 kb on + strand, within Psest_4284at 4475.949 kb on + strand, within Psest_4284at 4475.949 kb on + strand, within Psest_4284at 4475.949 kb on + strand, within Psest_4284at 4475.949 kb on + strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.950 kb on - strand, within Psest_4284at 4475.988 kb on + strand, within Psest_4284at 4475.988 kb on + strand, within Psest_4284at 4475.988 kb on + strand, within Psest_4284at 4475.988 kb on + strand, within Psest_4284at 4475.989 kb on - strand, within Psest_4284at 4475.989 kb on - strand, within Psest_4284at 4475.989 kb on - strand, within Psest_4284at 4475.989 kb on - strand, within Psest_4284at 4475.989 kb on - strand, within Psest_4284at 4476.135 kb on + strand, within Psest_4284at 4476.135 kb on + strand, within Psest_4284at 4476.135 kb on + strand, within Psest_4284at 4476.135 kb on + strand, within Psest_4284at 4476.135 kb on + strand, within Psest_4284at 4476.135 kb on + strand, within Psest_4284at 4476.135 kb on + strand, within Psest_4284at 4476.135 kb on + strand, within Psest_4284at 4476.135 kb on + strand, within Psest_4284at 4476.136 kb on - strand, within Psest_4284at 4476.136 kb on - strand, within Psest_4284at 4476.136 kb on - strand, within Psest_4284at 4476.136 kb on - strand, within Psest_4284at 4476.136 kb on - strand, within Psest_4284at 4476.195 kb on + strand, within Psest_4284at 4476.195 kb on + strand, within Psest_4284at 4476.195 kb on + strand, within Psest_4284at 4476.195 kb on + strand, within Psest_4284at 4476.195 kb on + strand, within Psest_4284at 4476.195 kb on + strand, within Psest_4284at 4476.195 kb on + strand, within Psest_4284at 4476.196 kb on - strand, within Psest_4284at 4476.196 kb on - strand, within Psest_4284at 4476.196 kb on - strand, within Psest_4284at 4476.196 kb on - strand, within Psest_4284at 4476.196 kb on - strand, within Psest_4284at 4476.196 kb on - strand, within Psest_4284at 4476.196 kb on - strand, within Psest_4284at 4476.300 kb on + strand, within Psest_4284at 4476.301 kb on - strand, within Psest_4284at 4476.301 kb on - strand, within Psest_4284at 4476.453 kb on + strand, within Psest_4284at 4476.480 kb on + strand, within Psest_4284at 4476.480 kb on + strand, within Psest_4284at 4476.481 kb on - strand, within Psest_4284

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.016 mg/ml
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4,473,420 + Psest_4282 0.26 +0.1
4,473,420 + Psest_4282 0.26 -1.0
4,473,420 + Psest_4282 0.26 -1.1
4,473,420 + Psest_4282 0.26 -0.4
4,473,420 + Psest_4282 0.26 +0.5
4,473,420 + Psest_4282 0.26 +1.1
4,473,420 + Psest_4282 0.26 -0.6
4,473,420 + Psest_4282 0.26 +1.8
4,473,420 + Psest_4282 0.26 -0.2
4,473,420 + Psest_4282 0.26 -2.2
4,473,421 - Psest_4282 0.26 +1.0
4,473,421 - Psest_4282 0.26 +0.3
4,473,421 - Psest_4282 0.26 -0.0
4,473,546 + Psest_4282 0.37 -0.0
4,473,546 + Psest_4282 0.37 -0.7
4,473,546 + Psest_4282 0.37 +0.0
4,473,547 - Psest_4282 0.37 +0.9
4,473,547 - Psest_4282 0.37 +1.4
4,473,547 - Psest_4282 0.37 +1.2
4,473,547 - Psest_4282 0.37 -0.6
4,473,547 - Psest_4282 0.37 -1.1
4,473,960 + Psest_4282 0.73 +0.6
4,473,994 - Psest_4282 0.76 -1.3
4,474,069 + Psest_4282 0.83 +0.4
4,474,070 - Psest_4282 0.83 +2.1
4,474,070 - Psest_4282 0.83 +1.2
4,474,316 + +0.5
4,474,316 + +1.7
4,474,316 + -0.1
4,474,316 + -0.2
4,474,316 + +0.5
4,474,316 + +0.7
4,474,317 - +0.0
4,474,317 - +2.7
4,474,317 - +0.4
4,474,317 - +0.3
4,474,317 - +1.9
4,474,317 - +1.2
4,474,317 - +1.2
4,474,317 - +0.8
4,474,448 - -0.7
4,474,494 + -0.3
4,474,494 + +0.4
4,474,494 + +0.1
4,474,494 + -2.1
4,474,494 + -0.6
4,474,494 + -0.9
4,474,495 - -0.7
4,474,495 - -2.0
4,474,495 - -3.4
4,474,495 - -2.1
4,474,599 + Psest_4283 0.17 -2.0
4,474,599 + Psest_4283 0.17 +0.4
4,474,599 + Psest_4283 0.17 -2.3
4,474,599 + Psest_4283 0.17 -1.3
4,474,600 - Psest_4283 0.17 -0.4
4,474,600 - Psest_4283 0.17 -1.0
4,474,619 + Psest_4283 0.19 +0.3
4,474,619 + Psest_4283 0.19 -0.7
4,474,619 + Psest_4283 0.19 -0.7
4,474,638 + Psest_4283 0.20 -0.2
4,474,638 + Psest_4283 0.20 +1.0
4,474,638 + Psest_4283 0.20 -2.2
4,474,638 + Psest_4283 0.20 +0.7
4,474,638 + Psest_4283 0.20 +0.1
4,474,638 + Psest_4283 0.20 -1.1
4,474,639 - Psest_4283 0.20 +1.7
4,474,639 - Psest_4283 0.20 -1.3
4,474,639 - Psest_4283 0.20 -1.0
4,474,639 - Psest_4283 0.20 -1.9
4,474,639 - Psest_4283 0.20 +0.1
4,474,639 - Psest_4283 0.20 -2.8
4,474,639 - Psest_4283 0.20 -0.6
4,474,639 - Psest_4283 0.20 -1.6
4,474,639 - Psest_4283 0.20 -0.3
4,474,639 - Psest_4283 0.20 +0.3
4,474,639 - Psest_4283 0.20 -0.9
4,474,820 - Psest_4283 0.37 -2.7
4,474,845 + Psest_4283 0.39 -0.2
4,474,845 + Psest_4283 0.39 -1.4
4,474,846 - Psest_4283 0.39 -1.7
4,474,846 - Psest_4283 0.39 -0.8
4,474,863 + Psest_4283 0.41 -1.1
4,474,864 - Psest_4283 0.41 -0.3
4,474,950 + Psest_4283 0.49 -2.0
4,474,950 + Psest_4283 0.49 -0.7
4,474,950 + Psest_4283 0.49 +0.6
4,474,951 - Psest_4283 0.49 -1.6
4,474,951 - Psest_4283 0.49 -1.8
4,474,951 - Psest_4283 0.49 -2.6
4,475,100 + Psest_4283 0.63 -1.5
4,475,100 + Psest_4283 0.63 -1.7
4,475,128 - Psest_4283 0.65 +0.3
4,475,406 + -0.6
4,475,406 + -2.3
4,475,406 + -0.7
4,475,407 - -0.1
4,475,407 - -1.9
4,475,407 - +0.1
4,475,407 - -1.4
4,475,421 + -1.3
4,475,421 + -0.5
4,475,421 + -0.6
4,475,421 + -0.9
4,475,421 + -0.3
4,475,421 + +0.3
4,475,421 + -1.7
4,475,421 + -1.1
4,475,421 + +0.7
4,475,421 + -1.2
4,475,422 - -1.8
4,475,422 - +0.2
4,475,422 - -0.9
4,475,422 - +0.6
4,475,422 - +0.3
4,475,422 - -0.1
4,475,422 - -1.4
4,475,422 - -0.4
4,475,422 - -0.2
4,475,422 - -0.7
4,475,422 - -0.3
4,475,422 - -0.1
4,475,422 - +0.0
4,475,422 - +0.2
4,475,422 - -1.3
4,475,731 + -0.7
4,475,844 + +0.2
4,475,844 + -0.2
4,475,844 + +1.8
4,475,845 - +0.3
4,475,875 - -0.1
4,475,875 - -1.3
4,475,875 - -0.8
4,475,949 + Psest_4284 0.16 +2.0
4,475,949 + Psest_4284 0.16 +1.6
4,475,949 + Psest_4284 0.16 -0.1
4,475,949 + Psest_4284 0.16 -1.8
4,475,949 + Psest_4284 0.16 -0.5
4,475,949 + Psest_4284 0.16 -0.7
4,475,949 + Psest_4284 0.16 -0.1
4,475,949 + Psest_4284 0.16 +0.4
4,475,949 + Psest_4284 0.16 -1.3
4,475,949 + Psest_4284 0.16 -0.1
4,475,949 + Psest_4284 0.16 +0.1
4,475,949 + Psest_4284 0.16 +0.9
4,475,950 - Psest_4284 0.17 -0.3
4,475,950 - Psest_4284 0.17 -1.2
4,475,950 - Psest_4284 0.17 -1.1
4,475,950 - Psest_4284 0.17 -0.3
4,475,950 - Psest_4284 0.17 +0.1
4,475,950 - Psest_4284 0.17 -0.8
4,475,950 - Psest_4284 0.17 -0.7
4,475,950 - Psest_4284 0.17 +0.3
4,475,950 - Psest_4284 0.17 +0.1
4,475,950 - Psest_4284 0.17 +0.4
4,475,950 - Psest_4284 0.17 +0.7
4,475,950 - Psest_4284 0.17 +1.1
4,475,950 - Psest_4284 0.17 +0.1
4,475,950 - Psest_4284 0.17 +0.6
4,475,988 + Psest_4284 0.20 -1.4
4,475,988 + Psest_4284 0.20 -1.3
4,475,988 + Psest_4284 0.20 -0.7
4,475,988 + Psest_4284 0.20 -1.9
4,475,989 - Psest_4284 0.20 +1.5
4,475,989 - Psest_4284 0.20 +0.5
4,475,989 - Psest_4284 0.20 -1.7
4,475,989 - Psest_4284 0.20 +1.4
4,475,989 - Psest_4284 0.20 -0.2
4,476,135 + Psest_4284 0.33 -1.2
4,476,135 + Psest_4284 0.33 -0.5
4,476,135 + Psest_4284 0.33 -0.2
4,476,135 + Psest_4284 0.33 +0.6
4,476,135 + Psest_4284 0.33 +1.4
4,476,135 + Psest_4284 0.33 +1.1
4,476,135 + Psest_4284 0.33 +0.1
4,476,135 + Psest_4284 0.33 -0.8
4,476,135 + Psest_4284 0.33 -0.7
4,476,136 - Psest_4284 0.34 -0.2
4,476,136 - Psest_4284 0.34 +0.5
4,476,136 - Psest_4284 0.34 +1.2
4,476,136 - Psest_4284 0.34 -0.1
4,476,136 - Psest_4284 0.34 +0.8
4,476,195 + Psest_4284 0.39 +0.4
4,476,195 + Psest_4284 0.39 +0.3
4,476,195 + Psest_4284 0.39 +0.1
4,476,195 + Psest_4284 0.39 -0.7
4,476,195 + Psest_4284 0.39 +1.8
4,476,195 + Psest_4284 0.39 +0.3
4,476,195 + Psest_4284 0.39 +0.8
4,476,196 - Psest_4284 0.39 -1.1
4,476,196 - Psest_4284 0.39 +0.7
4,476,196 - Psest_4284 0.39 +1.0
4,476,196 - Psest_4284 0.39 -0.4
4,476,196 - Psest_4284 0.39 +0.9
4,476,196 - Psest_4284 0.39 +0.6
4,476,196 - Psest_4284 0.39 +0.1
4,476,300 + Psest_4284 0.48 +0.4
4,476,301 - Psest_4284 0.49 -0.2
4,476,301 - Psest_4284 0.49 -0.2
4,476,453 + Psest_4284 0.62 +1.1
4,476,480 + Psest_4284 0.65 -0.9
4,476,480 + Psest_4284 0.65 +0.4
4,476,481 - Psest_4284 0.65 +2.0

Or see this region's nucleotide sequence