Experiment: Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0405 and Psest_0406 overlap by 41 nucleotides Psest_0406 and Psest_0407 are separated by 83 nucleotides Psest_0407 and Psest_0408 are separated by 135 nucleotides
Psest_0405: Psest_0405 - Phytoene/squalene synthetase, at 440,735 to 441,661
_0405
Psest_0406: Psest_0406 - Fatty acid hydroxylase superfamily., at 441,621 to 442,154
_0406
Psest_0407: Psest_0407 - Dioxygenases related to 2-nitropropane dioxygenase, at 442,238 to 443,281
_0407
Psest_0408: Psest_0408 - Protein involved in catabolism of external DNA, at 443,417 to 444,265
_0408
Position (kb) 442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 441.291 kb on - strand, within Psest_0405 at 441.349 kb on - strand, within Psest_0405 at 441.407 kb on + strand, within Psest_0405 at 441.411 kb on - strand, within Psest_0405 at 441.791 kb on + strand, within Psest_0406 at 441.838 kb on + strand, within Psest_0406 at 441.839 kb on - strand, within Psest_0406 at 441.839 kb on - strand, within Psest_0406 at 441.886 kb on + strand, within Psest_0406 at 441.886 kb on + strand, within Psest_0406 at 441.898 kb on + strand, within Psest_0406 at 441.994 kb on + strand, within Psest_0406 at 441.994 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.075 kb on + strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.076 kb on - strand, within Psest_0406 at 442.137 kb on - strand at 442.154 kb on + strand at 442.154 kb on + strand at 442.155 kb on - strand at 442.155 kb on - strand at 442.231 kb on + strand at 442.495 kb on + strand, within Psest_0407 at 442.566 kb on + strand, within Psest_0407 at 442.577 kb on + strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.578 kb on - strand, within Psest_0407 at 442.583 kb on + strand, within Psest_0407 at 442.584 kb on - strand, within Psest_0407 at 443.091 kb on + strand, within Psest_0407 at 443.091 kb on + strand, within Psest_0407 at 443.091 kb on + strand, within Psest_0407 at 443.092 kb on - strand, within Psest_0407 at 443.325 kb on + strand at 443.487 kb on + strand at 443.556 kb on - strand, within Psest_0408 at 443.584 kb on + strand, within Psest_0408 at 443.655 kb on - strand, within Psest_0408 at 443.700 kb on - strand, within Psest_0408 at 443.953 kb on + strand, within Psest_0408 at 443.954 kb on - strand, within Psest_0408 at 444.035 kb on + strand, within Psest_0408 at 444.035 kb on + strand, within Psest_0408 at 444.036 kb on - strand, within Psest_0408 at 444.253 kb on + strand at 444.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.016 mg/ml remove 441,291 - Psest_0405 0.60 -1.4 441,349 - Psest_0405 0.66 +0.3 441,407 + Psest_0405 0.72 -0.3 441,411 - Psest_0405 0.73 +1.3 441,791 + Psest_0406 0.32 +2.1 441,838 + Psest_0406 0.41 -0.4 441,839 - Psest_0406 0.41 -0.2 441,839 - Psest_0406 0.41 -1.8 441,886 + Psest_0406 0.50 -0.3 441,886 + Psest_0406 0.50 -1.0 441,898 + Psest_0406 0.52 +0.5 441,994 + Psest_0406 0.70 -0.5 441,994 + Psest_0406 0.70 -0.2 442,075 + Psest_0406 0.85 -2.5 442,075 + Psest_0406 0.85 -0.3 442,075 + Psest_0406 0.85 -1.0 442,075 + Psest_0406 0.85 +0.1 442,075 + Psest_0406 0.85 -0.9 442,075 + Psest_0406 0.85 +1.4 442,075 + Psest_0406 0.85 +0.9 442,075 + Psest_0406 0.85 +0.6 442,075 + Psest_0406 0.85 -2.4 442,075 + Psest_0406 0.85 -0.9 442,075 + Psest_0406 0.85 -0.7 442,075 + Psest_0406 0.85 -0.6 442,075 + Psest_0406 0.85 +0.1 442,076 - Psest_0406 0.85 -0.4 442,076 - Psest_0406 0.85 +2.4 442,076 - Psest_0406 0.85 -1.7 442,076 - Psest_0406 0.85 -1.9 442,076 - Psest_0406 0.85 -0.0 442,076 - Psest_0406 0.85 -1.7 442,076 - Psest_0406 0.85 -0.5 442,076 - Psest_0406 0.85 -0.4 442,076 - Psest_0406 0.85 +1.0 442,076 - Psest_0406 0.85 +1.9 442,076 - Psest_0406 0.85 +0.5 442,076 - Psest_0406 0.85 +0.2 442,076 - Psest_0406 0.85 -1.4 442,137 - -0.7 442,154 + +0.3 442,154 + -0.3 442,155 - +0.0 442,155 - +0.8 442,231 + +1.1 442,495 + Psest_0407 0.25 -0.5 442,566 + Psest_0407 0.31 -3.3 442,577 + Psest_0407 0.32 -1.4 442,578 - Psest_0407 0.33 -0.4 442,578 - Psest_0407 0.33 -0.4 442,578 - Psest_0407 0.33 +0.2 442,578 - Psest_0407 0.33 +0.6 442,583 + Psest_0407 0.33 +1.6 442,584 - Psest_0407 0.33 -1.5 443,091 + Psest_0407 0.82 -1.7 443,091 + Psest_0407 0.82 -0.7 443,091 + Psest_0407 0.82 +0.8 443,092 - Psest_0407 0.82 -0.0 443,325 + +0.2 443,487 + -1.5 443,556 - Psest_0408 0.16 -0.7 443,584 + Psest_0408 0.20 +1.1 443,655 - Psest_0408 0.28 +0.8 443,700 - Psest_0408 0.33 -0.2 443,953 + Psest_0408 0.63 -0.0 443,954 - Psest_0408 0.63 +0.3 444,035 + Psest_0408 0.73 -1.4 444,035 + Psest_0408 0.73 -1.0 444,036 - Psest_0408 0.73 -0.4 444,253 + -1.4 444,254 - +0.8
Or see this region's nucleotide sequence