Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1871

Experiment: Vancomycin 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.016 mg/ml
1,980,187	+		Psest_1869	0.90	-0.1
1,980,260	+				-0.3
1,980,364	+				-1.9
1,980,364	+				+0.4
1,980,403	+				+0.2
1,980,455	+				+0.2
1,980,455	+				-1.1
1,980,456	-				-0.4
1,980,456	-				-0.2
1,980,497	+				+0.7
1,980,497	+				-0.4
1,980,497	+				-0.9
1,980,559	+				-0.9
1,980,559	+				-1.1
1,980,559	+				-0.7
1,980,559	+				-0.2
1,980,560	-				-1.5
1,980,563	+				-1.5
1,980,563	+				+0.7
1,980,564	-				-0.3
1,980,592	+				-0.1
1,980,592	+				-0.2
1,980,592	+				-3.1
1,980,592	+				+0.6
1,980,592	+				-1.3
1,980,824	+		Psest_1870	0.54	+1.8
1,980,824	+		Psest_1870	0.54	+1.7
1,981,104	+				-1.0
1,981,184	+				+0.0
1,981,206	+				-1.9
1,981,206	+				-2.3
1,981,206	+				+0.5
1,981,206	+				-1.3
1,981,206	+				-1.3
1,981,207	-				-1.8
1,981,207	-				-2.3
1,981,207	-				-2.9
1,981,207	-				-0.9
1,981,208	+				-2.5
1,981,208	+				-1.9
1,981,208	+				-1.8
1,981,208	+				-2.1
1,981,208	+				-2.0
1,981,208	+				-2.7
1,981,208	+				-1.9
1,981,209	-				-2.5
1,981,209	-				-2.3
1,981,251	+				-4.1
1,981,305	-				-0.4
1,981,305	-				-2.1
1,981,368	-				-2.0
1,981,368	-				-1.8
1,981,418	+		Psest_1871	0.11	-0.1
1,981,419	-		Psest_1871	0.11	-2.3
1,981,419	-		Psest_1871	0.11	-1.0
1,981,581	+		Psest_1871	0.18	-1.4
1,981,582	-		Psest_1871	0.18	-2.7
1,981,582	-		Psest_1871	0.18	-3.1
1,981,719	-		Psest_1871	0.24	-1.9
1,981,730	+		Psest_1871	0.25	-2.4
1,981,731	-		Psest_1871	0.25	-2.4
1,981,733	+		Psest_1871	0.25	-2.4
1,981,819	+		Psest_1871	0.28	-1.9
1,981,819	+		Psest_1871	0.28	-1.6
1,981,819	+		Psest_1871	0.28	-5.7
1,981,820	-		Psest_1871	0.29	-0.7
1,981,820	-		Psest_1871	0.29	-2.5
1,981,820	-		Psest_1871	0.29	+0.4
1,981,997	+		Psest_1871	0.36	+0.5
1,982,141	+		Psest_1871	0.43	-1.8
1,982,141	+		Psest_1871	0.43	-1.3
1,982,142	-		Psest_1871	0.43	-3.1
1,982,607	+		Psest_1871	0.64	-2.3
1,983,069	+		Psest_1871	0.84	-1.7
1,983,399	+				-3.6
1,983,400	-				+0.8
1,983,402	+				-3.3
1,983,402	+				-3.6
1,983,403	-				-1.1
1,983,404	+				-0.9
1,983,404	+				-1.2
1,983,404	+				+0.1
1,983,404	+				-0.2
1,983,405	-				+0.4
1,983,405	-				-1.0
1,983,470	+		Psest_1872	0.12	+1.9
1,983,471	-		Psest_1872	0.12	-1.1
1,983,471	-		Psest_1872	0.12	-0.4
1,983,471	-		Psest_1872	0.12	-0.9
1,983,556	-		Psest_1872	0.42	+1.5
1,983,556	-		Psest_1872	0.42	-0.9
1,983,589	+		Psest_1872	0.54	-1.0
1,983,884	+		Psest_1873	0.18	-0.8
1,983,884	+		Psest_1873	0.18	+0.3
1,983,885	-		Psest_1873	0.19	+2.1
1,983,885	-		Psest_1873	0.19	+1.1
1,983,885	-		Psest_1873	0.19	-1.5
1,983,885	-		Psest_1873	0.19	-0.8
1,984,329	-		Psest_1873	0.69	-0.2