Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0821 and Psest_0822 are separated by 1 nucleotides Psest_0822 and Psest_0823 overlap by 4 nucleotides Psest_0823 and Psest_0824 overlap by 8 nucleotides Psest_0824 and Psest_0825 overlap by 26 nucleotides
Psest_0821: Psest_0821 - Cytochrome D1 heme domain., at 894,264 to 895,439
_0821
Psest_0822: Psest_0822 - Transcriptional regulators, at 895,441 to 895,899
_0822
Psest_0823: Psest_0823 - Transcriptional regulators, at 895,896 to 896,408
_0823
Psest_0824: Psest_0824 - Transcriptional regulators, at 896,401 to 896,844
_0824
Psest_0825: Psest_0825 - transcriptional regulator, AsnC family, at 896,819 to 897,325
_0825
Position (kb) 895
896 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 894.483 kb on + strand, within Psest_0821 at 894.483 kb on + strand, within Psest_0821 at 894.483 kb on + strand, within Psest_0821 at 894.483 kb on + strand, within Psest_0821 at 894.484 kb on - strand, within Psest_0821 at 894.618 kb on + strand, within Psest_0821 at 894.618 kb on + strand, within Psest_0821 at 894.619 kb on - strand, within Psest_0821 at 894.619 kb on - strand, within Psest_0821 at 894.654 kb on - strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.757 kb on - strand, within Psest_0821 at 894.757 kb on - strand, within Psest_0821 at 894.757 kb on - strand, within Psest_0821 at 894.757 kb on - strand, within Psest_0821 at 894.852 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 895.002 kb on + strand, within Psest_0821 at 895.002 kb on + strand, within Psest_0821 at 895.210 kb on + strand, within Psest_0821 at 895.211 kb on - strand, within Psest_0821 at 895.211 kb on - strand, within Psest_0821 at 895.353 kb on + strand at 895.354 kb on - strand at 895.447 kb on - strand at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.726 kb on + strand, within Psest_0822 at 895.727 kb on - strand, within Psest_0822 at 895.744 kb on + strand, within Psest_0822 at 895.745 kb on - strand, within Psest_0822 at 896.155 kb on + strand, within Psest_0823 at 896.156 kb on - strand, within Psest_0823 at 896.196 kb on + strand, within Psest_0823 at 896.197 kb on - strand, within Psest_0823 at 896.229 kb on + strand, within Psest_0823 at 896.229 kb on + strand, within Psest_0823 at 896.230 kb on - strand, within Psest_0823 at 896.230 kb on - strand, within Psest_0823
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 894,483 + Psest_0821 0.19 +0.5 894,483 + Psest_0821 0.19 +0.3 894,483 + Psest_0821 0.19 -0.1 894,483 + Psest_0821 0.19 -0.6 894,484 - Psest_0821 0.19 -0.3 894,618 + Psest_0821 0.30 +0.1 894,618 + Psest_0821 0.30 +0.7 894,619 - Psest_0821 0.30 -0.2 894,619 - Psest_0821 0.30 -0.1 894,654 - Psest_0821 0.33 -0.2 894,756 + Psest_0821 0.42 +0.4 894,756 + Psest_0821 0.42 +1.2 894,756 + Psest_0821 0.42 -1.6 894,756 + Psest_0821 0.42 -1.0 894,756 + Psest_0821 0.42 -0.4 894,756 + Psest_0821 0.42 +0.9 894,757 - Psest_0821 0.42 +1.0 894,757 - Psest_0821 0.42 +0.4 894,757 - Psest_0821 0.42 +0.8 894,757 - Psest_0821 0.42 +0.8 894,852 + Psest_0821 0.50 +1.5 894,885 + Psest_0821 0.53 +0.1 894,885 + Psest_0821 0.53 +0.7 894,885 + Psest_0821 0.53 -0.1 894,885 + Psest_0821 0.53 +1.6 894,885 + Psest_0821 0.53 -2.1 894,885 + Psest_0821 0.53 +0.3 894,885 + Psest_0821 0.53 +0.2 894,886 - Psest_0821 0.53 -1.2 894,886 - Psest_0821 0.53 -1.3 894,886 - Psest_0821 0.53 -0.3 894,886 - Psest_0821 0.53 +2.6 894,886 - Psest_0821 0.53 -0.1 894,886 - Psest_0821 0.53 -0.4 894,886 - Psest_0821 0.53 -0.7 894,886 - Psest_0821 0.53 +1.0 894,886 - Psest_0821 0.53 +1.3 894,886 - Psest_0821 0.53 -1.3 894,886 - Psest_0821 0.53 +0.9 895,002 + Psest_0821 0.63 +0.7 895,002 + Psest_0821 0.63 +0.4 895,210 + Psest_0821 0.80 -1.0 895,211 - Psest_0821 0.81 +0.2 895,211 - Psest_0821 0.81 +0.6 895,353 + +2.0 895,354 - -2.3 895,447 - +0.8 895,726 + Psest_0822 0.62 +0.3 895,726 + Psest_0822 0.62 -1.0 895,726 + Psest_0822 0.62 +0.2 895,726 + Psest_0822 0.62 -0.2 895,726 + Psest_0822 0.62 -0.6 895,726 + Psest_0822 0.62 +0.4 895,727 - Psest_0822 0.62 -0.5 895,744 + Psest_0822 0.66 +0.1 895,745 - Psest_0822 0.66 -2.8 896,155 + Psest_0823 0.50 +0.5 896,156 - Psest_0823 0.51 -0.0 896,196 + Psest_0823 0.58 +1.9 896,197 - Psest_0823 0.59 -1.4 896,229 + Psest_0823 0.65 -0.3 896,229 + Psest_0823 0.65 -0.1 896,230 - Psest_0823 0.65 +1.4 896,230 - Psest_0823 0.65 +0.4
Or see this region's nucleotide sequence