Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0783 and Psest_0784 are separated by 126 nucleotides Psest_0784 and Psest_0785 are separated by 108 nucleotides
Psest_0783: Psest_0783 - PAS domain S-box, at 852,318 to 856,490
_0783
Psest_0784: Psest_0784 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 856,617 to 857,993
_0784
Psest_0785: Psest_0785 - Thioredoxin reductase, at 858,102 to 859,049
_0785
Position (kb) 856
857
858 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 855.619 kb on + strand, within Psest_0783 at 855.620 kb on - strand, within Psest_0783 at 855.620 kb on - strand, within Psest_0783 at 855.620 kb on - strand, within Psest_0783 at 855.620 kb on - strand, within Psest_0783 at 855.692 kb on - strand, within Psest_0783 at 855.692 kb on - strand, within Psest_0783 at 855.692 kb on - strand, within Psest_0783 at 855.774 kb on - strand, within Psest_0783 at 856.065 kb on + strand, within Psest_0783 at 856.065 kb on + strand, within Psest_0783 at 856.065 kb on + strand, within Psest_0783 at 856.066 kb on - strand, within Psest_0783 at 856.085 kb on + strand at 856.171 kb on + strand at 856.171 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.581 kb on - strand at 856.581 kb on - strand at 856.581 kb on - strand at 856.601 kb on + strand at 856.666 kb on + strand at 856.666 kb on + strand at 856.667 kb on - strand at 856.667 kb on - strand at 856.667 kb on - strand at 856.667 kb on - strand at 856.667 kb on - strand at 857.005 kb on + strand, within Psest_0784 at 857.006 kb on - strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.086 kb on + strand, within Psest_0784 at 857.086 kb on + strand, within Psest_0784 at 857.087 kb on - strand, within Psest_0784 at 857.087 kb on - strand, within Psest_0784 at 857.087 kb on - strand, within Psest_0784 at 857.087 kb on - strand, within Psest_0784 at 857.182 kb on + strand, within Psest_0784 at 857.183 kb on - strand, within Psest_0784 at 857.560 kb on + strand, within Psest_0784 at 857.560 kb on + strand, within Psest_0784 at 857.560 kb on + strand, within Psest_0784 at 857.561 kb on - strand, within Psest_0784 at 857.561 kb on - strand, within Psest_0784 at 857.561 kb on - strand, within Psest_0784 at 857.561 kb on - strand, within Psest_0784 at 857.564 kb on - strand, within Psest_0784 at 857.721 kb on + strand, within Psest_0784 at 857.721 kb on + strand, within Psest_0784 at 857.721 kb on + strand, within Psest_0784 at 857.842 kb on + strand, within Psest_0784 at 857.842 kb on + strand, within Psest_0784 at 858.020 kb on - strand at 858.020 kb on - strand at 858.020 kb on - strand at 858.020 kb on - strand at 858.021 kb on + strand at 858.021 kb on + strand at 858.021 kb on + strand at 858.021 kb on + strand at 858.021 kb on + strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.027 kb on + strand at 858.027 kb on + strand at 858.104 kb on - strand at 858.104 kb on - strand at 858.152 kb on + strand at 858.353 kb on - strand, within Psest_0785 at 858.353 kb on - strand, within Psest_0785 at 858.457 kb on + strand, within Psest_0785 at 858.581 kb on - strand, within Psest_0785 at 858.581 kb on - strand, within Psest_0785 at 858.962 kb on - strand at 858.962 kb on - strand at 858.962 kb on - strand at 858.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 855,619 + Psest_0783 0.79 +0.5 855,620 - Psest_0783 0.79 -0.0 855,620 - Psest_0783 0.79 +0.4 855,620 - Psest_0783 0.79 -0.9 855,620 - Psest_0783 0.79 +0.6 855,692 - Psest_0783 0.81 -0.4 855,692 - Psest_0783 0.81 +0.2 855,692 - Psest_0783 0.81 +0.1 855,774 - Psest_0783 0.83 -0.4 856,065 + Psest_0783 0.90 -0.5 856,065 + Psest_0783 0.90 +0.8 856,065 + Psest_0783 0.90 +0.1 856,066 - Psest_0783 0.90 -1.2 856,085 + +0.7 856,171 + -1.3 856,171 + -1.8 856,213 + -0.7 856,213 + +0.7 856,213 + +0.1 856,213 + +0.7 856,213 + +0.9 856,213 + -0.5 856,213 + -0.2 856,213 + -0.1 856,213 + -0.4 856,213 + +0.2 856,213 + +0.9 856,213 + -0.9 856,213 + +0.0 856,214 - +0.2 856,214 - -0.1 856,214 - -2.1 856,214 - +0.7 856,214 - +0.3 856,214 - +0.0 856,214 - -0.3 856,214 - -0.3 856,214 - +0.5 856,581 - -0.1 856,581 - -1.1 856,581 - +0.2 856,601 + +0.2 856,666 + -1.2 856,666 + -0.2 856,667 - +1.4 856,667 - -0.3 856,667 - +0.0 856,667 - +1.2 856,667 - +1.0 857,005 + Psest_0784 0.28 +1.3 857,006 - Psest_0784 0.28 +0.2 857,083 + Psest_0784 0.34 -0.3 857,083 + Psest_0784 0.34 +0.6 857,083 + Psest_0784 0.34 -0.1 857,083 + Psest_0784 0.34 +0.0 857,083 + Psest_0784 0.34 +0.9 857,083 + Psest_0784 0.34 -1.2 857,083 + Psest_0784 0.34 -0.3 857,083 + Psest_0784 0.34 +1.3 857,083 + Psest_0784 0.34 -0.1 857,083 + Psest_0784 0.34 +1.1 857,083 + Psest_0784 0.34 -0.4 857,083 + Psest_0784 0.34 -0.4 857,083 + Psest_0784 0.34 -2.2 857,083 + Psest_0784 0.34 -0.7 857,083 + Psest_0784 0.34 -1.3 857,083 + Psest_0784 0.34 -0.5 857,083 + Psest_0784 0.34 +0.2 857,083 + Psest_0784 0.34 -0.7 857,083 + Psest_0784 0.34 -0.1 857,083 + Psest_0784 0.34 -0.5 857,083 + Psest_0784 0.34 +1.1 857,084 - Psest_0784 0.34 -0.1 857,084 - Psest_0784 0.34 +0.7 857,084 - Psest_0784 0.34 -0.8 857,084 - Psest_0784 0.34 -1.5 857,084 - Psest_0784 0.34 +2.3 857,084 - Psest_0784 0.34 -1.5 857,084 - Psest_0784 0.34 +1.8 857,084 - Psest_0784 0.34 -1.7 857,084 - Psest_0784 0.34 +0.7 857,084 - Psest_0784 0.34 +0.7 857,084 - Psest_0784 0.34 +0.7 857,084 - Psest_0784 0.34 -1.6 857,084 - Psest_0784 0.34 +0.3 857,084 - Psest_0784 0.34 +0.2 857,084 - Psest_0784 0.34 +0.4 857,084 - Psest_0784 0.34 -0.3 857,084 - Psest_0784 0.34 +0.6 857,084 - Psest_0784 0.34 +0.9 857,086 + Psest_0784 0.34 -1.2 857,086 + Psest_0784 0.34 -0.3 857,087 - Psest_0784 0.34 -0.0 857,087 - Psest_0784 0.34 -0.4 857,087 - Psest_0784 0.34 -0.4 857,087 - Psest_0784 0.34 -0.5 857,182 + Psest_0784 0.41 -0.9 857,183 - Psest_0784 0.41 -1.6 857,560 + Psest_0784 0.68 +0.5 857,560 + Psest_0784 0.68 -1.1 857,560 + Psest_0784 0.68 -0.2 857,561 - Psest_0784 0.69 +1.0 857,561 - Psest_0784 0.69 -1.2 857,561 - Psest_0784 0.69 -0.3 857,561 - Psest_0784 0.69 +0.3 857,564 - Psest_0784 0.69 -1.2 857,721 + Psest_0784 0.80 +0.3 857,721 + Psest_0784 0.80 -0.9 857,721 + Psest_0784 0.80 -0.7 857,842 + Psest_0784 0.89 +0.5 857,842 + Psest_0784 0.89 -1.2 858,020 - -0.9 858,020 - -1.3 858,020 - -0.8 858,020 - +0.0 858,021 + -0.9 858,021 + -0.4 858,021 + +2.7 858,021 + +0.7 858,021 + +0.2 858,022 - -0.4 858,022 - +0.1 858,022 - -0.3 858,022 - +0.3 858,022 - -0.3 858,022 - -0.1 858,027 + -0.2 858,027 + +3.1 858,104 - -0.5 858,104 - +2.2 858,152 + +2.1 858,353 - Psest_0785 0.26 -0.4 858,353 - Psest_0785 0.26 +0.5 858,457 + Psest_0785 0.37 -1.0 858,581 - Psest_0785 0.51 -1.3 858,581 - Psest_0785 0.51 +0.9 858,962 - -0.2 858,962 - +0.5 858,962 - -1.4 858,962 - -0.3
Or see this region's nucleotide sequence