Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0503 and Psest_0504 are separated by 225 nucleotides Psest_0504 and Psest_0505 overlap by 4 nucleotides Psest_0505 and Psest_0506 are separated by 10 nucleotides Psest_0506 and Psest_0507 are separated by 27 nucleotides
Psest_0503: Psest_0503 - Acyl dehydratase, at 558,058 to 558,513
_0503
Psest_0504: Psest_0504 - Putative effector of murein hydrolase LrgA, at 558,739 to 559,101
_0504
Psest_0505: Psest_0505 - Putative effector of murein hydrolase, at 559,098 to 559,817
_0505
Psest_0506: Psest_0506 - Uncharacterized protein, similar to the N-terminal domain of Lon protease, at 559,828 to 560,412
_0506
Psest_0507: Psest_0507 - Uncharacterized membrane-associated protein, at 560,440 to 561,759
_0507
Position (kb) 559
560 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 558.196 kb on + strand, within Psest_0503 at 558.268 kb on - strand, within Psest_0503 at 558.480 kb on - strand at 558.480 kb on - strand at 558.480 kb on - strand at 558.480 kb on - strand at 558.535 kb on + strand at 558.535 kb on + strand at 558.536 kb on - strand at 558.536 kb on - strand at 558.536 kb on - strand at 558.562 kb on - strand at 558.617 kb on - strand at 558.617 kb on - strand at 558.617 kb on - strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.711 kb on + strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.712 kb on - strand at 558.920 kb on - strand, within Psest_0504 at 558.964 kb on + strand, within Psest_0504 at 558.964 kb on + strand, within Psest_0504 at 558.965 kb on - strand, within Psest_0504 at 558.965 kb on - strand, within Psest_0504 at 558.966 kb on + strand, within Psest_0504 at 558.966 kb on + strand, within Psest_0504 at 558.966 kb on + strand, within Psest_0504 at 558.967 kb on - strand, within Psest_0504 at 559.116 kb on + strand at 559.117 kb on - strand at 559.166 kb on + strand at 559.167 kb on - strand at 559.167 kb on - strand at 559.191 kb on + strand, within Psest_0505 at 559.192 kb on - strand, within Psest_0505 at 559.192 kb on - strand, within Psest_0505 at 559.219 kb on + strand, within Psest_0505 at 559.287 kb on + strand, within Psest_0505 at 559.288 kb on - strand, within Psest_0505 at 559.288 kb on - strand, within Psest_0505 at 559.296 kb on + strand, within Psest_0505 at 559.859 kb on + strand at 559.860 kb on - strand at 559.860 kb on - strand at 559.860 kb on - strand at 559.860 kb on - strand at 559.906 kb on + strand, within Psest_0506 at 559.907 kb on - strand, within Psest_0506 at 559.955 kb on + strand, within Psest_0506 at 559.955 kb on + strand, within Psest_0506 at 559.956 kb on - strand, within Psest_0506 at 560.299 kb on + strand, within Psest_0506 at 560.453 kb on + strand at 560.453 kb on + strand at 560.454 kb on - strand at 560.454 kb on - strand at 560.654 kb on + strand, within Psest_0507 at 560.654 kb on + strand, within Psest_0507 at 560.655 kb on - strand, within Psest_0507 at 560.805 kb on - strand, within Psest_0507 at 560.805 kb on - strand, within Psest_0507
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 558,196 + Psest_0503 0.30 -0.2 558,268 - Psest_0503 0.46 -1.6 558,480 - +0.4 558,480 - +0.5 558,480 - -1.4 558,480 - +0.3 558,535 + -0.9 558,535 + -0.8 558,536 - +0.6 558,536 - +0.7 558,536 - -1.4 558,562 - -2.7 558,617 - -1.7 558,617 - +0.3 558,617 - -3.3 558,711 + -1.7 558,711 + -0.8 558,711 + +2.1 558,711 + -0.2 558,711 + -0.7 558,711 + -2.7 558,711 + +0.5 558,711 + -0.2 558,711 + -0.3 558,711 + -0.4 558,712 - -0.5 558,712 - +0.4 558,712 - -0.1 558,712 - -0.5 558,712 - -0.8 558,712 - +0.8 558,712 - +2.1 558,920 - Psest_0504 0.50 -1.1 558,964 + Psest_0504 0.62 -1.0 558,964 + Psest_0504 0.62 -0.1 558,965 - Psest_0504 0.62 +0.2 558,965 - Psest_0504 0.62 -0.1 558,966 + Psest_0504 0.63 -0.6 558,966 + Psest_0504 0.63 -0.2 558,966 + Psest_0504 0.63 -0.1 558,967 - Psest_0504 0.63 +1.3 559,116 + -0.2 559,117 - +0.5 559,166 + +0.2 559,167 - -0.4 559,167 - -0.6 559,191 + Psest_0505 0.13 -1.2 559,192 - Psest_0505 0.13 -0.8 559,192 - Psest_0505 0.13 -0.4 559,219 + Psest_0505 0.17 -0.4 559,287 + Psest_0505 0.26 -1.8 559,288 - Psest_0505 0.26 -0.8 559,288 - Psest_0505 0.26 -1.0 559,296 + Psest_0505 0.28 -1.0 559,859 + -0.3 559,860 - -0.6 559,860 - +0.7 559,860 - +0.3 559,860 - +3.3 559,906 + Psest_0506 0.13 -1.2 559,907 - Psest_0506 0.14 +0.9 559,955 + Psest_0506 0.22 -2.2 559,955 + Psest_0506 0.22 -0.1 559,956 - Psest_0506 0.22 +0.3 560,299 + Psest_0506 0.81 +0.8 560,453 + -0.1 560,453 + +0.8 560,454 - -1.4 560,454 - -2.5 560,654 + Psest_0507 0.16 +0.8 560,654 + Psest_0507 0.16 +1.5 560,655 - Psest_0507 0.16 -2.4 560,805 - Psest_0507 0.28 -0.7 560,805 - Psest_0507 0.28 -0.8
Or see this region's nucleotide sequence