Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2670 and Psest_2671 are separated by 125 nucleotides Psest_2671 and Psest_2672 are separated by 72 nucleotides
Psest_2670: Psest_2670 - Uncharacterized conserved protein, at 2,857,825 to 2,858,646
_2670
Psest_2671: Psest_2671 - Transcriptional regulator, at 2,858,772 to 2,859,665
_2671
Psest_2672: Psest_2672 - Predicted membrane protein, at 2,859,738 to 2,861,063
_2672
Position (kb)
2858
2859
2860 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2858.042 kb on - strand, within Psest_2670 at 2858.042 kb on - strand, within Psest_2670 at 2858.054 kb on + strand, within Psest_2670 at 2858.075 kb on + strand, within Psest_2670 at 2858.075 kb on + strand, within Psest_2670 at 2858.075 kb on + strand, within Psest_2670 at 2858.076 kb on - strand, within Psest_2670 at 2858.076 kb on - strand, within Psest_2670 at 2858.637 kb on + strand at 2858.638 kb on - strand at 2858.638 kb on - strand at 2858.638 kb on - strand at 2859.053 kb on + strand, within Psest_2671 at 2859.054 kb on - strand, within Psest_2671 at 2859.343 kb on - strand, within Psest_2671 at 2859.401 kb on - strand, within Psest_2671 at 2859.547 kb on + strand, within Psest_2671 at 2859.548 kb on - strand, within Psest_2671 at 2859.618 kb on - strand at 2859.771 kb on + strand at 2859.771 kb on + strand at 2859.879 kb on + strand, within Psest_2672 at 2859.880 kb on - strand, within Psest_2672 at 2859.880 kb on - strand, within Psest_2672 at 2859.880 kb on - strand, within Psest_2672 at 2859.880 kb on - strand, within Psest_2672 at 2859.880 kb on - strand, within Psest_2672 at 2859.880 kb on - strand, within Psest_2672 at 2859.880 kb on - strand, within Psest_2672 at 2859.932 kb on + strand, within Psest_2672 at 2860.086 kb on + strand, within Psest_2672 at 2860.087 kb on - strand, within Psest_2672 at 2860.284 kb on + strand, within Psest_2672 at 2860.285 kb on - strand, within Psest_2672 at 2860.285 kb on - strand, within Psest_2672 at 2860.285 kb on - strand, within Psest_2672 at 2860.285 kb on - strand, within Psest_2672 at 2860.406 kb on - strand, within Psest_2672 at 2860.560 kb on + strand, within Psest_2672 at 2860.560 kb on + strand, within Psest_2672 at 2860.560 kb on + strand, within Psest_2672 at 2860.560 kb on + strand, within Psest_2672 at 2860.561 kb on - strand, within Psest_2672 at 2860.561 kb on - strand, within Psest_2672 at 2860.561 kb on - strand, within Psest_2672 at 2860.561 kb on - strand, within Psest_2672 at 2860.561 kb on - strand, within Psest_2672 at 2860.561 kb on - strand, within Psest_2672 at 2860.561 kb on - strand, within Psest_2672 at 2860.561 kb on - strand, within Psest_2672 at 2860.561 kb on - strand, within Psest_2672 at 2860.573 kb on - strand, within Psest_2672
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,858,042 - Psest_2670 0.26 -0.2 2,858,042 - Psest_2670 0.26 -0.1 2,858,054 + Psest_2670 0.28 +1.2 2,858,075 + Psest_2670 0.30 -0.2 2,858,075 + Psest_2670 0.30 +0.5 2,858,075 + Psest_2670 0.30 +0.8 2,858,076 - Psest_2670 0.31 +0.0 2,858,076 - Psest_2670 0.31 +2.1 2,858,637 + +1.0 2,858,638 - -0.9 2,858,638 - +0.8 2,858,638 - -0.6 2,859,053 + Psest_2671 0.31 +0.4 2,859,054 - Psest_2671 0.32 -2.1 2,859,343 - Psest_2671 0.64 +0.4 2,859,401 - Psest_2671 0.70 -0.3 2,859,547 + Psest_2671 0.87 -2.1 2,859,548 - Psest_2671 0.87 +0.3 2,859,618 - -0.2 2,859,771 + -0.9 2,859,771 + +1.4 2,859,879 + Psest_2672 0.11 +0.8 2,859,880 - Psest_2672 0.11 +0.6 2,859,880 - Psest_2672 0.11 +0.9 2,859,880 - Psest_2672 0.11 +1.4 2,859,880 - Psest_2672 0.11 +2.6 2,859,880 - Psest_2672 0.11 -0.1 2,859,880 - Psest_2672 0.11 +0.9 2,859,880 - Psest_2672 0.11 +0.3 2,859,932 + Psest_2672 0.15 -2.5 2,860,086 + Psest_2672 0.26 -0.1 2,860,087 - Psest_2672 0.26 -0.9 2,860,284 + Psest_2672 0.41 +1.4 2,860,285 - Psest_2672 0.41 +0.8 2,860,285 - Psest_2672 0.41 -0.4 2,860,285 - Psest_2672 0.41 -0.2 2,860,285 - Psest_2672 0.41 -1.6 2,860,406 - Psest_2672 0.50 -1.4 2,860,560 + Psest_2672 0.62 -0.2 2,860,560 + Psest_2672 0.62 +1.6 2,860,560 + Psest_2672 0.62 -0.2 2,860,560 + Psest_2672 0.62 -0.4 2,860,561 - Psest_2672 0.62 -0.1 2,860,561 - Psest_2672 0.62 +0.4 2,860,561 - Psest_2672 0.62 -1.5 2,860,561 - Psest_2672 0.62 +0.2 2,860,561 - Psest_2672 0.62 -1.1 2,860,561 - Psest_2672 0.62 -1.0 2,860,561 - Psest_2672 0.62 -0.1 2,860,561 - Psest_2672 0.62 +1.1 2,860,561 - Psest_2672 0.62 -2.8 2,860,573 - Psest_2672 0.63 +0.8
Or see this region's nucleotide sequence