Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1587

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1585 and Psest_1586 are separated by 17 nucleotidesPsest_1586 and Psest_1587 are separated by 30 nucleotidesPsest_1587 and Psest_1588 are separated by 12 nucleotidesPsest_1588 and Psest_1589 overlap by 11 nucleotides Psest_1585: Psest_1585 - amidohydrolase, at 1,689,977 to 1,691,248 _1585 Psest_1586: Psest_1586 - Transcriptional regulator, at 1,691,266 to 1,692,156 _1586 Psest_1587: Psest_1587 - hypothetical protein, at 1,692,187 to 1,692,885 _1587 Psest_1588: Psest_1588 - Uncharacterized protein involved in copper resistance, at 1,692,898 to 1,693,878 _1588 Psest_1589: Psest_1589 - hypothetical protein, at 1,693,868 to 1,694,185 _1589 Position (kb) 1692 1693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1691.196 kb on + strandat 1691.196 kb on + strandat 1691.197 kb on - strandat 1691.197 kb on - strandat 1691.197 kb on - strandat 1691.197 kb on - strandat 1691.197 kb on - strandat 1691.294 kb on + strandat 1691.294 kb on + strandat 1691.419 kb on + strand, within Psest_1586at 1691.419 kb on + strand, within Psest_1586at 1691.419 kb on + strand, within Psest_1586at 1691.420 kb on - strand, within Psest_1586at 1691.420 kb on - strand, within Psest_1586at 1691.420 kb on - strand, within Psest_1586at 1691.420 kb on - strand, within Psest_1586at 1691.420 kb on - strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.660 kb on + strand, within Psest_1586at 1691.660 kb on + strand, within Psest_1586at 1691.660 kb on + strand, within Psest_1586at 1691.660 kb on + strand, within Psest_1586at 1691.660 kb on + strand, within Psest_1586at 1691.661 kb on - strand, within Psest_1586at 1691.661 kb on - strand, within Psest_1586at 1691.661 kb on - strand, within Psest_1586at 1691.808 kb on + strand, within Psest_1586at 1691.809 kb on - strand, within Psest_1586at 1691.951 kb on + strand, within Psest_1586at 1691.952 kb on - strand, within Psest_1586at 1691.952 kb on - strand, within Psest_1586at 1691.968 kb on - strand, within Psest_1586at 1691.974 kb on + strand, within Psest_1586at 1691.974 kb on + strand, within Psest_1586at 1691.975 kb on - strand, within Psest_1586at 1692.154 kb on + strandat 1692.154 kb on + strandat 1692.155 kb on - strandat 1692.155 kb on - strandat 1692.155 kb on - strandat 1692.418 kb on + strand, within Psest_1587at 1692.419 kb on - strand, within Psest_1587at 1692.419 kb on - strand, within Psest_1587at 1692.419 kb on - strand, within Psest_1587at 1692.419 kb on - strand, within Psest_1587at 1692.461 kb on + strand, within Psest_1587at 1692.461 kb on + strand, within Psest_1587at 1692.461 kb on + strand, within Psest_1587at 1692.462 kb on - strand, within Psest_1587at 1692.462 kb on - strand, within Psest_1587at 1692.462 kb on - strand, within Psest_1587at 1692.462 kb on - strand, within Psest_1587at 1692.462 kb on - strand, within Psest_1587at 1692.462 kb on - strand, within Psest_1587at 1692.588 kb on - strand, within Psest_1587at 1692.656 kb on + strand, within Psest_1587at 1692.657 kb on - strand, within Psest_1587at 1692.976 kb on - strandat 1693.010 kb on + strand, within Psest_1588at 1693.010 kb on + strand, within Psest_1588at 1693.010 kb on + strand, within Psest_1588at 1693.010 kb on + strand, within Psest_1588at 1693.010 kb on + strand, within Psest_1588at 1693.011 kb on - strand, within Psest_1588at 1693.011 kb on - strand, within Psest_1588at 1693.011 kb on - strand, within Psest_1588at 1693.450 kb on - strand, within Psest_1588

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,691,196 + -1.3
1,691,196 + -0.9
1,691,197 - -0.5
1,691,197 - +1.2
1,691,197 - -0.3
1,691,197 - +0.5
1,691,197 - -0.8
1,691,294 + -0.1
1,691,294 + -0.2
1,691,419 + Psest_1586 0.17 -0.4
1,691,419 + Psest_1586 0.17 +0.4
1,691,419 + Psest_1586 0.17 -0.1
1,691,420 - Psest_1586 0.17 -1.5
1,691,420 - Psest_1586 0.17 +1.0
1,691,420 - Psest_1586 0.17 +0.2
1,691,420 - Psest_1586 0.17 +0.1
1,691,420 - Psest_1586 0.17 -1.3
1,691,656 + Psest_1586 0.44 -2.1
1,691,656 + Psest_1586 0.44 +0.6
1,691,656 + Psest_1586 0.44 +0.0
1,691,656 + Psest_1586 0.44 +0.4
1,691,656 + Psest_1586 0.44 -1.5
1,691,656 + Psest_1586 0.44 +0.4
1,691,656 + Psest_1586 0.44 -1.1
1,691,656 + Psest_1586 0.44 +0.6
1,691,656 + Psest_1586 0.44 -0.1
1,691,656 + Psest_1586 0.44 +0.9
1,691,656 + Psest_1586 0.44 -0.3
1,691,656 + Psest_1586 0.44 -0.4
1,691,657 - Psest_1586 0.44 -2.7
1,691,657 - Psest_1586 0.44 -0.9
1,691,657 - Psest_1586 0.44 +0.0
1,691,657 - Psest_1586 0.44 +0.4
1,691,657 - Psest_1586 0.44 +0.4
1,691,657 - Psest_1586 0.44 +0.3
1,691,657 - Psest_1586 0.44 -0.4
1,691,657 - Psest_1586 0.44 +0.8
1,691,657 - Psest_1586 0.44 -0.8
1,691,657 - Psest_1586 0.44 +2.0
1,691,657 - Psest_1586 0.44 -3.4
1,691,657 - Psest_1586 0.44 -1.2
1,691,657 - Psest_1586 0.44 -2.0
1,691,657 - Psest_1586 0.44 -0.7
1,691,657 - Psest_1586 0.44 +0.1
1,691,660 + Psest_1586 0.44 -0.0
1,691,660 + Psest_1586 0.44 -0.6
1,691,660 + Psest_1586 0.44 +1.0
1,691,660 + Psest_1586 0.44 +0.4
1,691,660 + Psest_1586 0.44 -0.4
1,691,661 - Psest_1586 0.44 +0.8
1,691,661 - Psest_1586 0.44 +0.2
1,691,661 - Psest_1586 0.44 +0.1
1,691,808 + Psest_1586 0.61 +0.2
1,691,809 - Psest_1586 0.61 +1.2
1,691,951 + Psest_1586 0.77 +0.3
1,691,952 - Psest_1586 0.77 -1.2
1,691,952 - Psest_1586 0.77 +2.0
1,691,968 - Psest_1586 0.79 +1.2
1,691,974 + Psest_1586 0.79 +1.8
1,691,974 + Psest_1586 0.79 +0.2
1,691,975 - Psest_1586 0.80 -0.3
1,692,154 + +2.2
1,692,154 + +0.6
1,692,155 - -0.0
1,692,155 - +0.1
1,692,155 - -0.4
1,692,418 + Psest_1587 0.33 +0.8
1,692,419 - Psest_1587 0.33 +0.5
1,692,419 - Psest_1587 0.33 +1.0
1,692,419 - Psest_1587 0.33 +1.4
1,692,419 - Psest_1587 0.33 -0.4
1,692,461 + Psest_1587 0.39 -1.4
1,692,461 + Psest_1587 0.39 +1.8
1,692,461 + Psest_1587 0.39 -0.2
1,692,462 - Psest_1587 0.39 +0.2
1,692,462 - Psest_1587 0.39 +0.7
1,692,462 - Psest_1587 0.39 +0.6
1,692,462 - Psest_1587 0.39 -1.6
1,692,462 - Psest_1587 0.39 +1.5
1,692,462 - Psest_1587 0.39 -1.3
1,692,588 - Psest_1587 0.57 +2.3
1,692,656 + Psest_1587 0.67 +0.4
1,692,657 - Psest_1587 0.67 +0.1
1,692,976 - +1.3
1,693,010 + Psest_1588 0.11 +0.6
1,693,010 + Psest_1588 0.11 -2.8
1,693,010 + Psest_1588 0.11 -2.1
1,693,010 + Psest_1588 0.11 +0.2
1,693,010 + Psest_1588 0.11 -0.5
1,693,011 - Psest_1588 0.12 +1.3
1,693,011 - Psest_1588 0.12 -1.4
1,693,011 - Psest_1588 0.12 -0.7
1,693,450 - Psest_1588 0.56 +1.3

Or see this region's nucleotide sequence