Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0113

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0112 and Psest_0113 are separated by 58 nucleotidesPsest_0113 and Psest_0114 overlap by 4 nucleotidesPsest_0114 and Psest_0115 are separated by 191 nucleotides Psest_0112: Psest_0112 - Transcriptional regulator, at 110,797 to 111,714 _0112 Psest_0113: Psest_0113 - Uncharacterized protein conserved in bacteria, at 111,773 to 112,414 _0113 Psest_0114: Psest_0114 - RNA polymerase sigma factor, sigma-70 family, at 112,411 to 112,980 _0114 Psest_0115: Psest_0115 - Predicted integral membrane protein, at 113,172 to 113,444 _0115 Position (kb) 111 112 113Strain fitness (log2 ratio) -2 -1 0 1 2at 110.819 kb on + strandat 110.819 kb on + strandat 110.819 kb on + strandat 110.819 kb on + strandat 110.820 kb on - strandat 110.820 kb on - strandat 110.820 kb on - strandat 110.820 kb on - strandat 110.820 kb on - strandat 110.820 kb on - strandat 110.820 kb on - strandat 110.949 kb on - strand, within Psest_0112at 111.296 kb on + strand, within Psest_0112at 111.297 kb on - strand, within Psest_0112at 111.297 kb on - strand, within Psest_0112at 111.297 kb on - strand, within Psest_0112at 111.297 kb on - strand, within Psest_0112at 111.401 kb on + strand, within Psest_0112at 111.402 kb on - strand, within Psest_0112at 111.402 kb on - strand, within Psest_0112at 111.402 kb on - strand, within Psest_0112at 111.512 kb on + strand, within Psest_0112at 111.512 kb on + strand, within Psest_0112at 111.512 kb on + strand, within Psest_0112at 111.512 kb on + strand, within Psest_0112at 111.512 kb on + strand, within Psest_0112at 111.512 kb on + strand, within Psest_0112at 111.744 kb on + strandat 111.745 kb on - strandat 111.806 kb on - strandat 111.841 kb on - strand, within Psest_0113at 112.281 kb on + strand, within Psest_0113at 112.281 kb on + strand, within Psest_0113at 112.577 kb on - strand, within Psest_0114at 112.789 kb on + strand, within Psest_0114at 112.789 kb on + strand, within Psest_0114at 112.968 kb on + strandat 112.969 kb on - strandat 112.969 kb on - strandat 113.112 kb on + strandat 113.112 kb on + strandat 113.112 kb on + strandat 113.112 kb on + strandat 113.113 kb on - strandat 113.113 kb on - strandat 113.113 kb on - strandat 113.113 kb on - strandat 113.113 kb on - strandat 113.384 kb on + strand, within Psest_0115

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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110,819 + +0.7
110,819 + +0.9
110,819 + +0.8
110,819 + +0.1
110,820 - -2.5
110,820 - +0.8
110,820 - +1.1
110,820 - +0.2
110,820 - -0.8
110,820 - +1.0
110,820 - -0.4
110,949 - Psest_0112 0.17 +0.8
111,296 + Psest_0112 0.54 +1.8
111,297 - Psest_0112 0.54 -0.3
111,297 - Psest_0112 0.54 -1.2
111,297 - Psest_0112 0.54 +0.4
111,297 - Psest_0112 0.54 +0.1
111,401 + Psest_0112 0.66 +1.9
111,402 - Psest_0112 0.66 -0.3
111,402 - Psest_0112 0.66 -0.1
111,402 - Psest_0112 0.66 +0.9
111,512 + Psest_0112 0.78 +1.1
111,512 + Psest_0112 0.78 +0.3
111,512 + Psest_0112 0.78 +1.2
111,512 + Psest_0112 0.78 -0.0
111,512 + Psest_0112 0.78 -0.5
111,512 + Psest_0112 0.78 -0.1
111,744 + -0.6
111,745 - +0.7
111,806 - -0.9
111,841 - Psest_0113 0.11 -1.3
112,281 + Psest_0113 0.79 +0.1
112,281 + Psest_0113 0.79 -0.4
112,577 - Psest_0114 0.29 +1.9
112,789 + Psest_0114 0.66 +1.3
112,789 + Psest_0114 0.66 -0.7
112,968 + +0.9
112,969 - +0.0
112,969 - +0.7
113,112 + -0.3
113,112 + -1.2
113,112 + -0.2
113,112 + -1.7
113,113 - +0.2
113,113 - +0.0
113,113 - +0.6
113,113 - +1.4
113,113 - +0.6
113,384 + Psest_0115 0.78 -0.3

Or see this region's nucleotide sequence