Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0784 and Psest_0785 are separated by 108 nucleotides Psest_0785 and Psest_0786 are separated by 324 nucleotides
Psest_0784: Psest_0784 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 856,617 to 857,993
_0784
Psest_0785: Psest_0785 - Thioredoxin reductase, at 858,102 to 859,049
_0785
Psest_0786: Psest_0786 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 859,374 to 860,399
_0786
Position (kb)
858
859
860 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 857.182 kb on + strand, within Psest_0784 at 857.183 kb on - strand, within Psest_0784 at 857.560 kb on + strand, within Psest_0784 at 857.560 kb on + strand, within Psest_0784 at 857.560 kb on + strand, within Psest_0784 at 857.561 kb on - strand, within Psest_0784 at 857.561 kb on - strand, within Psest_0784 at 857.561 kb on - strand, within Psest_0784 at 857.561 kb on - strand, within Psest_0784 at 857.564 kb on - strand, within Psest_0784 at 857.721 kb on + strand, within Psest_0784 at 857.721 kb on + strand, within Psest_0784 at 857.721 kb on + strand, within Psest_0784 at 857.842 kb on + strand, within Psest_0784 at 857.842 kb on + strand, within Psest_0784 at 858.020 kb on - strand at 858.020 kb on - strand at 858.020 kb on - strand at 858.020 kb on - strand at 858.021 kb on + strand at 858.021 kb on + strand at 858.021 kb on + strand at 858.021 kb on + strand at 858.021 kb on + strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.022 kb on - strand at 858.027 kb on + strand at 858.027 kb on + strand at 858.104 kb on - strand at 858.104 kb on - strand at 858.152 kb on + strand at 858.353 kb on - strand, within Psest_0785 at 858.353 kb on - strand, within Psest_0785 at 858.457 kb on + strand, within Psest_0785 at 858.581 kb on - strand, within Psest_0785 at 858.581 kb on - strand, within Psest_0785 at 858.962 kb on - strand at 858.962 kb on - strand at 858.962 kb on - strand at 858.962 kb on - strand at 859.077 kb on + strand at 859.078 kb on - strand at 859.384 kb on + strand at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 857,182 + Psest_0784 0.41 +1.1 857,183 - Psest_0784 0.41 -3.6 857,560 + Psest_0784 0.68 +0.5 857,560 + Psest_0784 0.68 +0.2 857,560 + Psest_0784 0.68 +0.5 857,561 - Psest_0784 0.69 -2.2 857,561 - Psest_0784 0.69 +0.5 857,561 - Psest_0784 0.69 +0.2 857,561 - Psest_0784 0.69 +1.3 857,564 - Psest_0784 0.69 +0.5 857,721 + Psest_0784 0.80 -0.7 857,721 + Psest_0784 0.80 +0.7 857,721 + Psest_0784 0.80 -0.4 857,842 + Psest_0784 0.89 -1.0 857,842 + Psest_0784 0.89 +0.6 858,020 - -0.0 858,020 - -1.2 858,020 - +1.3 858,020 - -0.8 858,021 + +0.1 858,021 + +1.1 858,021 + +0.5 858,021 + +0.3 858,021 + +0.2 858,022 - +1.1 858,022 - +0.8 858,022 - -0.8 858,022 - -1.1 858,022 - +1.1 858,022 - +1.7 858,027 + -0.1 858,027 + +2.6 858,104 - -1.1 858,104 - +0.3 858,152 + -0.1 858,353 - Psest_0785 0.26 -0.2 858,353 - Psest_0785 0.26 -1.4 858,457 + Psest_0785 0.37 +0.0 858,581 - Psest_0785 0.51 -1.2 858,581 - Psest_0785 0.51 -1.2 858,962 - +0.7 858,962 - +0.5 858,962 - +0.4 858,962 - -0.9 859,077 + -2.3 859,078 - -0.6 859,384 + +0.0 859,821 + Psest_0786 0.44 -1.8 859,821 + Psest_0786 0.44 +0.4 859,821 + Psest_0786 0.44 -1.9 859,821 + Psest_0786 0.44 -0.4 859,821 + Psest_0786 0.44 -0.1 859,822 - Psest_0786 0.44 -0.2 859,822 - Psest_0786 0.44 -2.4 859,822 - Psest_0786 0.44 -0.4
Or see this region's nucleotide sequence