Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0706

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0705 and Psest_0706 are separated by 76 nucleotidesPsest_0706 and Psest_0707 overlap by 11 nucleotidesPsest_0707 and Psest_0708 are separated by 112 nucleotides Psest_0705: Psest_0705 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 773,884 to 775,278 _0705 Psest_0706: Psest_0706 - His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 775,355 to 776,947 _0706 Psest_0707: Psest_0707 - MYND finger., at 776,937 to 777,170 _0707 Psest_0708: Psest_0708 - outer membrane assembly lipoprotein YfiO, at 777,283 to 778,272 _0708 Position (kb) 775 776 777Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 774.741 kb on + strand, within Psest_0705at 774.742 kb on - strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.281 kb on + strandat 775.281 kb on + strandat 775.282 kb on - strandat 775.282 kb on - strandat 775.423 kb on - strandat 775.467 kb on + strandat 775.467 kb on + strandat 775.467 kb on + strandat 775.468 kb on - strandat 775.468 kb on - strandat 775.468 kb on - strandat 775.578 kb on - strand, within Psest_0706at 775.644 kb on + strand, within Psest_0706at 775.645 kb on - strand, within Psest_0706at 775.661 kb on + strand, within Psest_0706at 775.797 kb on + strand, within Psest_0706at 775.797 kb on + strand, within Psest_0706at 776.490 kb on + strand, within Psest_0706at 776.491 kb on - strand, within Psest_0706at 776.526 kb on + strand, within Psest_0706at 776.526 kb on + strand, within Psest_0706at 776.526 kb on + strand, within Psest_0706at 776.526 kb on + strand, within Psest_0706at 776.526 kb on + strand, within Psest_0706at 776.526 kb on + strand, within Psest_0706at 776.527 kb on - strand, within Psest_0706at 776.538 kb on + strand, within Psest_0706at 776.538 kb on + strand, within Psest_0706at 776.538 kb on + strand, within Psest_0706at 776.538 kb on + strand, within Psest_0706at 776.538 kb on + strand, within Psest_0706at 776.538 kb on + strand, within Psest_0706at 776.539 kb on - strand, within Psest_0706at 776.539 kb on - strand, within Psest_0706at 776.539 kb on - strand, within Psest_0706at 776.539 kb on - strand, within Psest_0706at 776.539 kb on - strand, within Psest_0706at 776.664 kb on + strand, within Psest_0706at 776.664 kb on + strand, within Psest_0706at 776.664 kb on + strand, within Psest_0706at 776.664 kb on + strand, within Psest_0706at 776.664 kb on + strand, within Psest_0706at 776.772 kb on + strand, within Psest_0706at 776.772 kb on + strand, within Psest_0706at 776.889 kb on + strandat 776.890 kb on - strandat 776.986 kb on + strand, within Psest_0707at 777.024 kb on + strand, within Psest_0707at 777.024 kb on + strand, within Psest_0707at 777.024 kb on + strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.025 kb on - strand, within Psest_0707at 777.030 kb on + strand, within Psest_0707at 777.252 kb on + strandat 777.252 kb on + strandat 777.252 kb on + strandat 777.252 kb on + strandat 777.252 kb on + strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.253 kb on - strandat 777.343 kb on + strandat 777.409 kb on + strand, within Psest_0708at 777.555 kb on - strand, within Psest_0708at 777.555 kb on - strand, within Psest_0708

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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774,741 + Psest_0705 0.61 -0.0
774,742 - Psest_0705 0.62 -1.3
774,743 + Psest_0705 0.62 -1.7
774,743 + Psest_0705 0.62 -1.3
774,743 + Psest_0705 0.62 -0.3
774,743 + Psest_0705 0.62 +2.0
774,743 + Psest_0705 0.62 +0.9
774,743 + Psest_0705 0.62 -0.3
774,743 + Psest_0705 0.62 -0.5
774,743 + Psest_0705 0.62 -1.0
774,743 + Psest_0705 0.62 -1.7
774,743 + Psest_0705 0.62 -0.8
774,743 + Psest_0705 0.62 -1.4
774,744 - Psest_0705 0.62 -1.0
774,744 - Psest_0705 0.62 -0.8
774,744 - Psest_0705 0.62 +1.7
774,744 - Psest_0705 0.62 -0.1
774,744 - Psest_0705 0.62 -1.7
774,744 - Psest_0705 0.62 -1.8
774,744 - Psest_0705 0.62 +0.1
774,744 - Psest_0705 0.62 -0.4
775,016 + Psest_0705 0.81 -0.8
775,016 + Psest_0705 0.81 +0.7
775,016 + Psest_0705 0.81 -0.7
775,016 + Psest_0705 0.81 -1.3
775,016 + Psest_0705 0.81 -1.1
775,016 + Psest_0705 0.81 -2.8
775,016 + Psest_0705 0.81 -0.0
775,016 + Psest_0705 0.81 -0.3
775,016 + Psest_0705 0.81 -0.7
775,016 + Psest_0705 0.81 -2.2
775,016 + Psest_0705 0.81 -1.4
775,016 + Psest_0705 0.81 +0.4
775,016 + Psest_0705 0.81 -1.2
775,016 + Psest_0705 0.81 +0.9
775,016 + Psest_0705 0.81 +0.0
775,016 + Psest_0705 0.81 -1.0
775,017 - Psest_0705 0.81 -1.1
775,017 - Psest_0705 0.81 +1.2
775,017 - Psest_0705 0.81 -1.7
775,017 - Psest_0705 0.81 -0.6
775,017 - Psest_0705 0.81 -0.3
775,017 - Psest_0705 0.81 -1.3
775,017 - Psest_0705 0.81 +0.5
775,017 - Psest_0705 0.81 -0.0
775,017 - Psest_0705 0.81 -0.7
775,017 - Psest_0705 0.81 -3.8
775,017 - Psest_0705 0.81 +0.4
775,281 + -1.7
775,281 + +0.6
775,282 - +1.3
775,282 - +0.5
775,423 - -1.5
775,467 + -2.2
775,467 + -1.3
775,467 + -1.8
775,468 - -0.5
775,468 - +0.4
775,468 - -0.6
775,578 - Psest_0706 0.14 +0.0
775,644 + Psest_0706 0.18 -1.2
775,645 - Psest_0706 0.18 +2.2
775,661 + Psest_0706 0.19 -3.4
775,797 + Psest_0706 0.28 +0.6
775,797 + Psest_0706 0.28 -1.8
776,490 + Psest_0706 0.71 -0.0
776,491 - Psest_0706 0.71 -0.3
776,526 + Psest_0706 0.74 -1.0
776,526 + Psest_0706 0.74 -1.3
776,526 + Psest_0706 0.74 +0.2
776,526 + Psest_0706 0.74 -1.1
776,526 + Psest_0706 0.74 -0.1
776,526 + Psest_0706 0.74 -0.4
776,527 - Psest_0706 0.74 -0.0
776,538 + Psest_0706 0.74 -1.8
776,538 + Psest_0706 0.74 +0.4
776,538 + Psest_0706 0.74 -3.2
776,538 + Psest_0706 0.74 -1.3
776,538 + Psest_0706 0.74 +0.9
776,538 + Psest_0706 0.74 -1.2
776,539 - Psest_0706 0.74 -0.8
776,539 - Psest_0706 0.74 +1.4
776,539 - Psest_0706 0.74 -1.2
776,539 - Psest_0706 0.74 -2.4
776,539 - Psest_0706 0.74 -1.0
776,664 + Psest_0706 0.82 -1.2
776,664 + Psest_0706 0.82 -0.7
776,664 + Psest_0706 0.82 -2.4
776,664 + Psest_0706 0.82 +2.2
776,664 + Psest_0706 0.82 -1.0
776,772 + Psest_0706 0.89 -1.4
776,772 + Psest_0706 0.89 -0.9
776,889 + -2.0
776,890 - -1.2
776,986 + Psest_0707 0.21 -1.0
777,024 + Psest_0707 0.37 +0.0
777,024 + Psest_0707 0.37 +0.0
777,024 + Psest_0707 0.37 -1.6
777,025 - Psest_0707 0.38 +1.0
777,025 - Psest_0707 0.38 -0.8
777,025 - Psest_0707 0.38 +1.6
777,025 - Psest_0707 0.38 -0.8
777,025 - Psest_0707 0.38 -0.6
777,025 - Psest_0707 0.38 -0.2
777,025 - Psest_0707 0.38 +0.8
777,025 - Psest_0707 0.38 -0.1
777,025 - Psest_0707 0.38 -2.2
777,025 - Psest_0707 0.38 -1.3
777,030 + Psest_0707 0.40 -0.1
777,252 + -1.4
777,252 + -2.4
777,252 + -2.2
777,252 + -0.9
777,252 + +1.5
777,253 - +0.2
777,253 - +0.6
777,253 - +0.5
777,253 - -1.1
777,253 - +1.6
777,253 - +0.6
777,253 - +1.0
777,253 - -0.8
777,253 - +0.1
777,253 - +0.3
777,253 - +0.6
777,253 - -0.2
777,343 + -2.0
777,409 + Psest_0708 0.13 +1.2
777,555 - Psest_0708 0.27 +0.3
777,555 - Psest_0708 0.27 -1.6

Or see this region's nucleotide sequence