Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3779

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3778 and Psest_3779 are separated by 97 nucleotidesPsest_3779 and Psest_3780 are separated by 1 nucleotidesPsest_3780 and Psest_3781 are separated by 90 nucleotides Psest_3778: Psest_3778 - ATP-dependent DNA helicase Rep, at 3,946,644 to 3,948,653 _3778 Psest_3779: Psest_3779 - channel protein, hemolysin III family, at 3,948,751 to 3,949,368 _3779 Psest_3780: Psest_3780 - Transcriptional regulator, at 3,949,370 to 3,950,158 _3780 Psest_3781: Psest_3781 - methylmalonic acid semialdehyde dehydrogenase, at 3,950,249 to 3,951,751 _3781 Position (kb) 3948 3949 3950Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3948.696 kb on - strandat 3948.754 kb on + strandat 3948.755 kb on - strandat 3948.755 kb on - strandat 3948.883 kb on + strand, within Psest_3779at 3948.883 kb on + strand, within Psest_3779at 3948.884 kb on - strand, within Psest_3779at 3948.884 kb on - strand, within Psest_3779at 3948.907 kb on + strand, within Psest_3779at 3948.907 kb on + strand, within Psest_3779at 3948.907 kb on + strand, within Psest_3779at 3948.926 kb on - strand, within Psest_3779at 3948.926 kb on - strand, within Psest_3779at 3948.985 kb on + strand, within Psest_3779at 3948.985 kb on + strand, within Psest_3779at 3948.985 kb on + strand, within Psest_3779at 3948.985 kb on + strand, within Psest_3779at 3948.986 kb on - strand, within Psest_3779at 3948.986 kb on - strand, within Psest_3779at 3949.007 kb on - strand, within Psest_3779at 3949.007 kb on - strand, within Psest_3779at 3949.144 kb on + strand, within Psest_3779at 3949.144 kb on + strand, within Psest_3779at 3949.144 kb on + strand, within Psest_3779at 3949.145 kb on - strand, within Psest_3779at 3949.145 kb on - strand, within Psest_3779at 3949.243 kb on + strand, within Psest_3779at 3949.251 kb on - strand, within Psest_3779at 3949.357 kb on + strandat 3949.357 kb on + strandat 3949.357 kb on + strandat 3949.357 kb on + strandat 3949.357 kb on + strandat 3949.358 kb on - strandat 3949.358 kb on - strandat 3949.358 kb on - strandat 3949.665 kb on - strand, within Psest_3780at 3949.665 kb on - strand, within Psest_3780at 3949.720 kb on - strand, within Psest_3780at 3949.720 kb on - strand, within Psest_3780at 3949.720 kb on - strand, within Psest_3780at 3949.720 kb on - strand, within Psest_3780at 3949.812 kb on + strand, within Psest_3780at 3949.813 kb on - strand, within Psest_3780at 3949.813 kb on - strand, within Psest_3780at 3949.813 kb on - strand, within Psest_3780at 3950.250 kb on + strandat 3950.251 kb on - strandat 3950.251 kb on - strandat 3950.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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3,948,696 - +0.3
3,948,754 + -0.3
3,948,755 - +1.4
3,948,755 - -0.2
3,948,883 + Psest_3779 0.21 -0.5
3,948,883 + Psest_3779 0.21 +0.2
3,948,884 - Psest_3779 0.22 -1.4
3,948,884 - Psest_3779 0.22 +0.9
3,948,907 + Psest_3779 0.25 -0.5
3,948,907 + Psest_3779 0.25 +2.0
3,948,907 + Psest_3779 0.25 -0.7
3,948,926 - Psest_3779 0.28 +0.1
3,948,926 - Psest_3779 0.28 +0.6
3,948,985 + Psest_3779 0.38 +0.8
3,948,985 + Psest_3779 0.38 +1.0
3,948,985 + Psest_3779 0.38 -0.6
3,948,985 + Psest_3779 0.38 -0.2
3,948,986 - Psest_3779 0.38 +1.1
3,948,986 - Psest_3779 0.38 -0.4
3,949,007 - Psest_3779 0.41 +0.1
3,949,007 - Psest_3779 0.41 +1.1
3,949,144 + Psest_3779 0.64 +0.5
3,949,144 + Psest_3779 0.64 +0.5
3,949,144 + Psest_3779 0.64 -0.4
3,949,145 - Psest_3779 0.64 -1.3
3,949,145 - Psest_3779 0.64 +0.5
3,949,243 + Psest_3779 0.80 +0.1
3,949,251 - Psest_3779 0.81 -0.8
3,949,357 + +0.8
3,949,357 + +0.8
3,949,357 + +1.0
3,949,357 + +0.7
3,949,357 + +1.9
3,949,358 - -2.0
3,949,358 - -1.5
3,949,358 - +0.9
3,949,665 - Psest_3780 0.37 +0.3
3,949,665 - Psest_3780 0.37 -1.9
3,949,720 - Psest_3780 0.44 -1.7
3,949,720 - Psest_3780 0.44 +0.4
3,949,720 - Psest_3780 0.44 -0.2
3,949,720 - Psest_3780 0.44 -0.4
3,949,812 + Psest_3780 0.56 +3.1
3,949,813 - Psest_3780 0.56 -0.7
3,949,813 - Psest_3780 0.56 -0.9
3,949,813 - Psest_3780 0.56 -1.7
3,950,250 + -0.7
3,950,251 - +0.5
3,950,251 - -0.3
3,950,251 - +0.2

Or see this region's nucleotide sequence