Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3778 and Psest_3779 are separated by 97 nucleotides Psest_3779 and Psest_3780 are separated by 1 nucleotides Psest_3780 and Psest_3781 are separated by 90 nucleotides
Psest_3778: Psest_3778 - ATP-dependent DNA helicase Rep, at 3,946,644 to 3,948,653
_3778
Psest_3779: Psest_3779 - channel protein, hemolysin III family, at 3,948,751 to 3,949,368
_3779
Psest_3780: Psest_3780 - Transcriptional regulator, at 3,949,370 to 3,950,158
_3780
Psest_3781: Psest_3781 - methylmalonic acid semialdehyde dehydrogenase, at 3,950,249 to 3,951,751
_3781
Position (kb)
3948
3949
3950 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3948.696 kb on - strand at 3948.754 kb on + strand at 3948.755 kb on - strand at 3948.755 kb on - strand at 3948.883 kb on + strand, within Psest_3779 at 3948.883 kb on + strand, within Psest_3779 at 3948.884 kb on - strand, within Psest_3779 at 3948.884 kb on - strand, within Psest_3779 at 3948.907 kb on + strand, within Psest_3779 at 3948.907 kb on + strand, within Psest_3779 at 3948.907 kb on + strand, within Psest_3779 at 3948.926 kb on - strand, within Psest_3779 at 3948.926 kb on - strand, within Psest_3779 at 3948.985 kb on + strand, within Psest_3779 at 3948.985 kb on + strand, within Psest_3779 at 3948.985 kb on + strand, within Psest_3779 at 3948.985 kb on + strand, within Psest_3779 at 3948.986 kb on - strand, within Psest_3779 at 3948.986 kb on - strand, within Psest_3779 at 3949.007 kb on - strand, within Psest_3779 at 3949.007 kb on - strand, within Psest_3779 at 3949.144 kb on + strand, within Psest_3779 at 3949.144 kb on + strand, within Psest_3779 at 3949.144 kb on + strand, within Psest_3779 at 3949.145 kb on - strand, within Psest_3779 at 3949.145 kb on - strand, within Psest_3779 at 3949.243 kb on + strand, within Psest_3779 at 3949.251 kb on - strand, within Psest_3779 at 3949.357 kb on + strand at 3949.357 kb on + strand at 3949.357 kb on + strand at 3949.357 kb on + strand at 3949.357 kb on + strand at 3949.358 kb on - strand at 3949.358 kb on - strand at 3949.358 kb on - strand at 3949.665 kb on - strand, within Psest_3780 at 3949.665 kb on - strand, within Psest_3780 at 3949.720 kb on - strand, within Psest_3780 at 3949.720 kb on - strand, within Psest_3780 at 3949.720 kb on - strand, within Psest_3780 at 3949.720 kb on - strand, within Psest_3780 at 3949.812 kb on + strand, within Psest_3780 at 3949.813 kb on - strand, within Psest_3780 at 3949.813 kb on - strand, within Psest_3780 at 3949.813 kb on - strand, within Psest_3780 at 3950.250 kb on + strand at 3950.251 kb on - strand at 3950.251 kb on - strand at 3950.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 3,948,696 - +0.3 3,948,754 + -0.3 3,948,755 - +1.4 3,948,755 - -0.2 3,948,883 + Psest_3779 0.21 -0.5 3,948,883 + Psest_3779 0.21 +0.2 3,948,884 - Psest_3779 0.22 -1.4 3,948,884 - Psest_3779 0.22 +0.9 3,948,907 + Psest_3779 0.25 -0.5 3,948,907 + Psest_3779 0.25 +2.0 3,948,907 + Psest_3779 0.25 -0.7 3,948,926 - Psest_3779 0.28 +0.1 3,948,926 - Psest_3779 0.28 +0.6 3,948,985 + Psest_3779 0.38 +0.8 3,948,985 + Psest_3779 0.38 +1.0 3,948,985 + Psest_3779 0.38 -0.6 3,948,985 + Psest_3779 0.38 -0.2 3,948,986 - Psest_3779 0.38 +1.1 3,948,986 - Psest_3779 0.38 -0.4 3,949,007 - Psest_3779 0.41 +0.1 3,949,007 - Psest_3779 0.41 +1.1 3,949,144 + Psest_3779 0.64 +0.5 3,949,144 + Psest_3779 0.64 +0.5 3,949,144 + Psest_3779 0.64 -0.4 3,949,145 - Psest_3779 0.64 -1.3 3,949,145 - Psest_3779 0.64 +0.5 3,949,243 + Psest_3779 0.80 +0.1 3,949,251 - Psest_3779 0.81 -0.8 3,949,357 + +0.8 3,949,357 + +0.8 3,949,357 + +1.0 3,949,357 + +0.7 3,949,357 + +1.9 3,949,358 - -2.0 3,949,358 - -1.5 3,949,358 - +0.9 3,949,665 - Psest_3780 0.37 +0.3 3,949,665 - Psest_3780 0.37 -1.9 3,949,720 - Psest_3780 0.44 -1.7 3,949,720 - Psest_3780 0.44 +0.4 3,949,720 - Psest_3780 0.44 -0.2 3,949,720 - Psest_3780 0.44 -0.4 3,949,812 + Psest_3780 0.56 +3.1 3,949,813 - Psest_3780 0.56 -0.7 3,949,813 - Psest_3780 0.56 -0.9 3,949,813 - Psest_3780 0.56 -1.7 3,950,250 + -0.7 3,950,251 - +0.5 3,950,251 - -0.3 3,950,251 - +0.2
Or see this region's nucleotide sequence