Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2802

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2800 and Psest_2801 are separated by 84 nucleotidesPsest_2801 and Psest_2802 are separated by 257 nucleotidesPsest_2802 and Psest_2803 are separated by 156 nucleotides Psest_2800: Psest_2800 - hypothetical protein, at 2,990,221 to 2,991,012 _2800 Psest_2801: Psest_2801 - hypothetical protein, at 2,991,097 to 2,991,612 _2801 Psest_2802: Psest_2802 - Na+/proline symporter, at 2,991,870 to 2,993,807 _2802 Psest_2803: Psest_2803 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 2,993,964 to 2,994,884 _2803 Position (kb) 2991 2992 2993 2994Strain fitness (log2 ratio) -2 -1 0 1 2at 2990.878 kb on + strand, within Psest_2800at 2990.878 kb on + strand, within Psest_2800at 2990.878 kb on + strand, within Psest_2800at 2991.025 kb on + strandat 2991.044 kb on + strandat 2991.049 kb on + strandat 2991.101 kb on + strandat 2991.126 kb on - strandat 2991.230 kb on + strand, within Psest_2801at 2991.231 kb on - strand, within Psest_2801at 2991.231 kb on - strand, within Psest_2801at 2991.231 kb on - strand, within Psest_2801at 2991.235 kb on - strand, within Psest_2801at 2991.285 kb on - strand, within Psest_2801at 2991.347 kb on + strand, within Psest_2801at 2991.348 kb on - strand, within Psest_2801at 2991.348 kb on - strand, within Psest_2801at 2991.348 kb on - strand, within Psest_2801at 2991.496 kb on - strand, within Psest_2801at 2991.592 kb on - strandat 2991.628 kb on + strandat 2991.628 kb on + strandat 2991.628 kb on + strandat 2991.629 kb on - strandat 2991.629 kb on - strandat 2991.642 kb on + strandat 2991.643 kb on - strandat 2991.678 kb on + strandat 2991.679 kb on - strandat 2991.956 kb on - strandat 2992.048 kb on - strandat 2992.064 kb on + strand, within Psest_2802at 2992.064 kb on + strand, within Psest_2802at 2992.064 kb on + strand, within Psest_2802at 2992.064 kb on + strand, within Psest_2802at 2992.065 kb on - strand, within Psest_2802at 2992.065 kb on - strand, within Psest_2802at 2992.068 kb on + strand, within Psest_2802at 2992.086 kb on + strand, within Psest_2802at 2992.087 kb on - strand, within Psest_2802at 2992.087 kb on - strand, within Psest_2802at 2992.151 kb on + strand, within Psest_2802at 2992.192 kb on + strand, within Psest_2802at 2992.192 kb on + strand, within Psest_2802at 2992.234 kb on + strand, within Psest_2802at 2992.234 kb on + strand, within Psest_2802at 2992.234 kb on + strand, within Psest_2802at 2992.235 kb on - strand, within Psest_2802at 2992.235 kb on - strand, within Psest_2802at 2992.321 kb on + strand, within Psest_2802at 2992.321 kb on + strand, within Psest_2802at 2992.321 kb on + strand, within Psest_2802at 2992.321 kb on + strand, within Psest_2802at 2992.322 kb on - strand, within Psest_2802at 2992.322 kb on - strand, within Psest_2802at 2992.375 kb on + strand, within Psest_2802at 2992.376 kb on - strand, within Psest_2802at 2992.437 kb on + strand, within Psest_2802at 2992.594 kb on + strand, within Psest_2802at 2992.594 kb on + strand, within Psest_2802at 2992.595 kb on - strand, within Psest_2802at 2992.595 kb on - strand, within Psest_2802at 2992.595 kb on - strand, within Psest_2802at 2992.638 kb on - strand, within Psest_2802at 2992.872 kb on - strand, within Psest_2802at 2993.113 kb on + strand, within Psest_2802at 2993.113 kb on + strand, within Psest_2802at 2993.114 kb on - strand, within Psest_2802at 2993.114 kb on - strand, within Psest_2802at 2993.123 kb on + strand, within Psest_2802at 2993.194 kb on + strand, within Psest_2802at 2993.194 kb on + strand, within Psest_2802at 2993.194 kb on + strand, within Psest_2802at 2993.194 kb on + strand, within Psest_2802at 2993.194 kb on + strand, within Psest_2802at 2993.194 kb on + strand, within Psest_2802at 2993.195 kb on - strand, within Psest_2802at 2993.195 kb on - strand, within Psest_2802at 2993.195 kb on - strand, within Psest_2802at 2993.195 kb on - strand, within Psest_2802at 2993.195 kb on - strand, within Psest_2802at 2993.195 kb on - strand, within Psest_2802at 2993.327 kb on - strand, within Psest_2802at 2993.327 kb on - strand, within Psest_2802at 2993.327 kb on - strand, within Psest_2802at 2993.431 kb on + strand, within Psest_2802at 2993.431 kb on + strand, within Psest_2802at 2993.434 kb on + strand, within Psest_2802at 2993.434 kb on + strand, within Psest_2802at 2993.434 kb on + strand, within Psest_2802at 2993.434 kb on + strand, within Psest_2802at 2993.435 kb on - strand, within Psest_2802at 2993.435 kb on - strand, within Psest_2802at 2993.435 kb on - strand, within Psest_2802at 2993.435 kb on - strand, within Psest_2802at 2993.435 kb on - strand, within Psest_2802at 2993.435 kb on - strand, within Psest_2802at 2993.435 kb on - strand, within Psest_2802at 2993.435 kb on - strand, within Psest_2802at 2993.435 kb on - strand, within Psest_2802at 2993.435 kb on - strand, within Psest_2802at 2993.435 kb on - strand, within Psest_2802at 2993.435 kb on - strand, within Psest_2802at 2993.480 kb on - strand, within Psest_2802at 2993.572 kb on + strand, within Psest_2802at 2993.572 kb on + strand, within Psest_2802at 2993.572 kb on + strand, within Psest_2802at 2993.573 kb on - strand, within Psest_2802at 2993.573 kb on - strand, within Psest_2802at 2993.573 kb on - strand, within Psest_2802at 2993.714 kb on - strandat 2993.797 kb on - strandat 2993.797 kb on - strandat 2993.797 kb on - strandat 2993.813 kb on + strandat 2993.890 kb on + strandat 2993.890 kb on + strandat 2993.890 kb on + strandat 2993.891 kb on - strandat 2993.891 kb on - strandat 2993.979 kb on + strandat 2994.024 kb on + strandat 2994.067 kb on + strand, within Psest_2803at 2994.067 kb on + strand, within Psest_2803at 2994.067 kb on + strand, within Psest_2803at 2994.067 kb on + strand, within Psest_2803at 2994.068 kb on - strand, within Psest_2803at 2994.068 kb on - strand, within Psest_2803at 2994.068 kb on - strand, within Psest_2803at 2994.068 kb on - strand, within Psest_2803at 2994.068 kb on - strand, within Psest_2803at 2994.068 kb on - strand, within Psest_2803at 2994.113 kb on + strand, within Psest_2803at 2994.113 kb on + strand, within Psest_2803at 2994.113 kb on + strand, within Psest_2803at 2994.113 kb on + strand, within Psest_2803at 2994.113 kb on + strand, within Psest_2803at 2994.332 kb on + strand, within Psest_2803at 2994.332 kb on + strand, within Psest_2803at 2994.332 kb on + strand, within Psest_2803at 2994.333 kb on - strand, within Psest_2803at 2994.333 kb on - strand, within Psest_2803at 2994.333 kb on - strand, within Psest_2803at 2994.333 kb on - strand, within Psest_2803at 2994.451 kb on + strand, within Psest_2803at 2994.456 kb on - strand, within Psest_2803at 2994.456 kb on - strand, within Psest_2803at 2994.643 kb on + strand, within Psest_2803at 2994.643 kb on + strand, within Psest_2803at 2994.643 kb on + strand, within Psest_2803at 2994.644 kb on - strand, within Psest_2803at 2994.644 kb on - strand, within Psest_2803at 2994.644 kb on - strand, within Psest_2803at 2994.644 kb on - strand, within Psest_2803at 2994.644 kb on - strand, within Psest_2803

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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2,990,878 + Psest_2800 0.83 -1.9
2,990,878 + Psest_2800 0.83 +2.0
2,990,878 + Psest_2800 0.83 +0.4
2,991,025 + -0.2
2,991,044 + +1.1
2,991,049 + +0.2
2,991,101 + +0.8
2,991,126 - -0.7
2,991,230 + Psest_2801 0.26 -1.0
2,991,231 - Psest_2801 0.26 +0.9
2,991,231 - Psest_2801 0.26 -0.5
2,991,231 - Psest_2801 0.26 +1.3
2,991,235 - Psest_2801 0.27 +0.2
2,991,285 - Psest_2801 0.36 +0.1
2,991,347 + Psest_2801 0.48 +0.7
2,991,348 - Psest_2801 0.49 +0.1
2,991,348 - Psest_2801 0.49 -0.5
2,991,348 - Psest_2801 0.49 -1.4
2,991,496 - Psest_2801 0.77 +0.8
2,991,592 - -0.5
2,991,628 + -0.5
2,991,628 + -0.0
2,991,628 + +0.6
2,991,629 - +0.6
2,991,629 - -0.2
2,991,642 + -1.6
2,991,643 - +0.6
2,991,678 + +0.2
2,991,679 - -0.1
2,991,956 - -0.5
2,992,048 - +1.7
2,992,064 + Psest_2802 0.10 +1.8
2,992,064 + Psest_2802 0.10 +1.6
2,992,064 + Psest_2802 0.10 +0.5
2,992,064 + Psest_2802 0.10 -0.2
2,992,065 - Psest_2802 0.10 -1.1
2,992,065 - Psest_2802 0.10 -0.8
2,992,068 + Psest_2802 0.10 +0.5
2,992,086 + Psest_2802 0.11 +1.3
2,992,087 - Psest_2802 0.11 +1.2
2,992,087 - Psest_2802 0.11 -0.5
2,992,151 + Psest_2802 0.14 +0.7
2,992,192 + Psest_2802 0.17 +0.3
2,992,192 + Psest_2802 0.17 +0.3
2,992,234 + Psest_2802 0.19 -0.7
2,992,234 + Psest_2802 0.19 +0.9
2,992,234 + Psest_2802 0.19 +0.3
2,992,235 - Psest_2802 0.19 -0.2
2,992,235 - Psest_2802 0.19 +1.1
2,992,321 + Psest_2802 0.23 -0.1
2,992,321 + Psest_2802 0.23 -0.2
2,992,321 + Psest_2802 0.23 -1.7
2,992,321 + Psest_2802 0.23 +0.7
2,992,322 - Psest_2802 0.23 -0.7
2,992,322 - Psest_2802 0.23 -0.3
2,992,375 + Psest_2802 0.26 +1.3
2,992,376 - Psest_2802 0.26 +1.1
2,992,437 + Psest_2802 0.29 +2.2
2,992,594 + Psest_2802 0.37 +1.7
2,992,594 + Psest_2802 0.37 +0.0
2,992,595 - Psest_2802 0.37 +0.2
2,992,595 - Psest_2802 0.37 +0.1
2,992,595 - Psest_2802 0.37 +1.9
2,992,638 - Psest_2802 0.40 +0.4
2,992,872 - Psest_2802 0.52 +0.8
2,993,113 + Psest_2802 0.64 +2.5
2,993,113 + Psest_2802 0.64 +1.8
2,993,114 - Psest_2802 0.64 -0.4
2,993,114 - Psest_2802 0.64 +1.5
2,993,123 + Psest_2802 0.65 -0.3
2,993,194 + Psest_2802 0.68 +0.4
2,993,194 + Psest_2802 0.68 +0.8
2,993,194 + Psest_2802 0.68 +1.3
2,993,194 + Psest_2802 0.68 +0.4
2,993,194 + Psest_2802 0.68 +1.3
2,993,194 + Psest_2802 0.68 +1.3
2,993,195 - Psest_2802 0.68 -1.6
2,993,195 - Psest_2802 0.68 -0.2
2,993,195 - Psest_2802 0.68 -2.5
2,993,195 - Psest_2802 0.68 +1.6
2,993,195 - Psest_2802 0.68 +0.9
2,993,195 - Psest_2802 0.68 +0.0
2,993,327 - Psest_2802 0.75 +0.2
2,993,327 - Psest_2802 0.75 +0.1
2,993,327 - Psest_2802 0.75 -0.5
2,993,431 + Psest_2802 0.81 +1.7
2,993,431 + Psest_2802 0.81 +1.1
2,993,434 + Psest_2802 0.81 -0.2
2,993,434 + Psest_2802 0.81 -0.6
2,993,434 + Psest_2802 0.81 -0.3
2,993,434 + Psest_2802 0.81 +0.2
2,993,435 - Psest_2802 0.81 +1.3
2,993,435 - Psest_2802 0.81 +0.5
2,993,435 - Psest_2802 0.81 -0.3
2,993,435 - Psest_2802 0.81 -1.5
2,993,435 - Psest_2802 0.81 +0.4
2,993,435 - Psest_2802 0.81 -1.1
2,993,435 - Psest_2802 0.81 -1.1
2,993,435 - Psest_2802 0.81 -0.2
2,993,435 - Psest_2802 0.81 -1.5
2,993,435 - Psest_2802 0.81 +1.2
2,993,435 - Psest_2802 0.81 +1.3
2,993,435 - Psest_2802 0.81 +0.4
2,993,480 - Psest_2802 0.83 +0.7
2,993,572 + Psest_2802 0.88 +1.0
2,993,572 + Psest_2802 0.88 +0.6
2,993,572 + Psest_2802 0.88 +1.6
2,993,573 - Psest_2802 0.88 -0.9
2,993,573 - Psest_2802 0.88 -1.4
2,993,573 - Psest_2802 0.88 -1.1
2,993,714 - -1.1
2,993,797 - -0.9
2,993,797 - -0.9
2,993,797 - -1.1
2,993,813 + -1.4
2,993,890 + -1.6
2,993,890 + -0.5
2,993,890 + -1.7
2,993,891 - -0.1
2,993,891 - -0.9
2,993,979 + -0.7
2,994,024 + +0.0
2,994,067 + Psest_2803 0.11 -0.6
2,994,067 + Psest_2803 0.11 -1.4
2,994,067 + Psest_2803 0.11 +1.3
2,994,067 + Psest_2803 0.11 +0.4
2,994,068 - Psest_2803 0.11 -0.4
2,994,068 - Psest_2803 0.11 -0.0
2,994,068 - Psest_2803 0.11 +0.1
2,994,068 - Psest_2803 0.11 -0.1
2,994,068 - Psest_2803 0.11 -0.7
2,994,068 - Psest_2803 0.11 +2.0
2,994,113 + Psest_2803 0.16 +0.5
2,994,113 + Psest_2803 0.16 +1.0
2,994,113 + Psest_2803 0.16 +0.3
2,994,113 + Psest_2803 0.16 -0.4
2,994,113 + Psest_2803 0.16 -0.6
2,994,332 + Psest_2803 0.40 -0.7
2,994,332 + Psest_2803 0.40 -2.6
2,994,332 + Psest_2803 0.40 -0.0
2,994,333 - Psest_2803 0.40 -0.8
2,994,333 - Psest_2803 0.40 -0.3
2,994,333 - Psest_2803 0.40 +1.6
2,994,333 - Psest_2803 0.40 +0.4
2,994,451 + Psest_2803 0.53 +0.4
2,994,456 - Psest_2803 0.53 +0.0
2,994,456 - Psest_2803 0.53 -1.1
2,994,643 + Psest_2803 0.74 +0.7
2,994,643 + Psest_2803 0.74 +0.0
2,994,643 + Psest_2803 0.74 +0.7
2,994,644 - Psest_2803 0.74 -0.9
2,994,644 - Psest_2803 0.74 +0.1
2,994,644 - Psest_2803 0.74 -0.7
2,994,644 - Psest_2803 0.74 +0.6
2,994,644 - Psest_2803 0.74 -0.3

Or see this region's nucleotide sequence