Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0705

Experiment: Dimethyl Sulfoxide 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0704 and Psest_0705 are separated by 40 nucleotidesPsest_0705 and Psest_0706 are separated by 76 nucleotides Psest_0704: Psest_0704 - Uncharacterized protein conserved in bacteria, at 772,785 to 773,843 _0704 Psest_0705: Psest_0705 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 773,884 to 775,278 _0705 Psest_0706: Psest_0706 - His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 775,355 to 776,947 _0706 Position (kb) 773 774 775 776Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 772.902 kb on + strand, within Psest_0704at 772.902 kb on + strand, within Psest_0704at 772.902 kb on + strand, within Psest_0704at 772.952 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.371 kb on - strand, within Psest_0704at 773.371 kb on - strand, within Psest_0704at 773.371 kb on - strand, within Psest_0704at 773.371 kb on - strand, within Psest_0704at 773.784 kb on + strandat 773.784 kb on + strandat 773.784 kb on + strandat 773.784 kb on + strandat 773.785 kb on - strandat 773.785 kb on - strandat 774.132 kb on + strand, within Psest_0705at 774.132 kb on + strand, within Psest_0705at 774.132 kb on + strand, within Psest_0705at 774.133 kb on - strand, within Psest_0705at 774.133 kb on - strand, within Psest_0705at 774.134 kb on + strand, within Psest_0705at 774.135 kb on - strand, within Psest_0705at 774.135 kb on - strand, within Psest_0705at 774.186 kb on - strand, within Psest_0705at 774.186 kb on - strand, within Psest_0705at 774.344 kb on + strand, within Psest_0705at 774.344 kb on + strand, within Psest_0705at 774.344 kb on + strand, within Psest_0705at 774.741 kb on + strand, within Psest_0705at 774.742 kb on - strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.743 kb on + strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 774.744 kb on - strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.016 kb on + strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.017 kb on - strand, within Psest_0705at 775.281 kb on + strandat 775.281 kb on + strandat 775.282 kb on - strandat 775.282 kb on - strandat 775.423 kb on - strandat 775.467 kb on + strandat 775.467 kb on + strandat 775.467 kb on + strandat 775.468 kb on - strandat 775.468 kb on - strandat 775.468 kb on - strandat 775.578 kb on - strand, within Psest_0706at 775.644 kb on + strand, within Psest_0706at 775.645 kb on - strand, within Psest_0706at 775.661 kb on + strand, within Psest_0706at 775.797 kb on + strand, within Psest_0706at 775.797 kb on + strand, within Psest_0706

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
remove
772,902 + Psest_0704 0.11 -0.5
772,902 + Psest_0704 0.11 +0.8
772,902 + Psest_0704 0.11 +0.1
772,952 + Psest_0704 0.16 -0.3
773,370 + Psest_0704 0.55 +0.5
773,370 + Psest_0704 0.55 -0.8
773,370 + Psest_0704 0.55 +0.5
773,370 + Psest_0704 0.55 -2.3
773,370 + Psest_0704 0.55 +1.6
773,370 + Psest_0704 0.55 -0.2
773,370 + Psest_0704 0.55 -1.3
773,370 + Psest_0704 0.55 +0.6
773,370 + Psest_0704 0.55 -0.3
773,370 + Psest_0704 0.55 +1.8
773,371 - Psest_0704 0.55 -2.0
773,371 - Psest_0704 0.55 +1.6
773,371 - Psest_0704 0.55 +0.1
773,371 - Psest_0704 0.55 +1.3
773,784 + +0.1
773,784 + +1.7
773,784 + -0.6
773,784 + +1.0
773,785 - -1.4
773,785 - +0.3
774,132 + Psest_0705 0.18 -1.1
774,132 + Psest_0705 0.18 -0.0
774,132 + Psest_0705 0.18 -0.8
774,133 - Psest_0705 0.18 -1.2
774,133 - Psest_0705 0.18 -2.2
774,134 + Psest_0705 0.18 -3.1
774,135 - Psest_0705 0.18 -2.0
774,135 - Psest_0705 0.18 -0.5
774,186 - Psest_0705 0.22 -1.7
774,186 - Psest_0705 0.22 -0.6
774,344 + Psest_0705 0.33 -0.7
774,344 + Psest_0705 0.33 -0.4
774,344 + Psest_0705 0.33 -1.3
774,741 + Psest_0705 0.61 -0.3
774,742 - Psest_0705 0.62 -0.6
774,743 + Psest_0705 0.62 -1.4
774,743 + Psest_0705 0.62 -0.1
774,743 + Psest_0705 0.62 +0.2
774,743 + Psest_0705 0.62 -1.3
774,743 + Psest_0705 0.62 +0.5
774,743 + Psest_0705 0.62 -0.1
774,743 + Psest_0705 0.62 +0.8
774,743 + Psest_0705 0.62 -1.3
774,743 + Psest_0705 0.62 -0.7
774,743 + Psest_0705 0.62 +0.2
774,743 + Psest_0705 0.62 +0.1
774,744 - Psest_0705 0.62 -1.4
774,744 - Psest_0705 0.62 -0.9
774,744 - Psest_0705 0.62 +1.3
774,744 - Psest_0705 0.62 -1.3
774,744 - Psest_0705 0.62 -0.5
774,744 - Psest_0705 0.62 -1.9
774,744 - Psest_0705 0.62 -0.1
774,744 - Psest_0705 0.62 -0.8
775,016 + Psest_0705 0.81 -1.1
775,016 + Psest_0705 0.81 +1.1
775,016 + Psest_0705 0.81 -1.4
775,016 + Psest_0705 0.81 -0.8
775,016 + Psest_0705 0.81 -0.6
775,016 + Psest_0705 0.81 -1.3
775,016 + Psest_0705 0.81 -0.4
775,016 + Psest_0705 0.81 -1.1
775,016 + Psest_0705 0.81 -0.5
775,016 + Psest_0705 0.81 -1.9
775,016 + Psest_0705 0.81 -1.1
775,016 + Psest_0705 0.81 +0.3
775,016 + Psest_0705 0.81 -0.4
775,016 + Psest_0705 0.81 -0.6
775,016 + Psest_0705 0.81 -1.2
775,016 + Psest_0705 0.81 -2.0
775,017 - Psest_0705 0.81 -1.2
775,017 - Psest_0705 0.81 +0.0
775,017 - Psest_0705 0.81 -2.4
775,017 - Psest_0705 0.81 -0.3
775,017 - Psest_0705 0.81 -1.1
775,017 - Psest_0705 0.81 +0.5
775,017 - Psest_0705 0.81 -1.3
775,017 - Psest_0705 0.81 -0.5
775,017 - Psest_0705 0.81 -1.5
775,017 - Psest_0705 0.81 -0.5
775,017 - Psest_0705 0.81 +0.3
775,281 + -0.1
775,281 + -3.1
775,282 - +1.3
775,282 - +0.3
775,423 - -0.6
775,467 + -0.7
775,467 + -1.3
775,467 + -0.3
775,468 - +0.1
775,468 - +0.7
775,468 - -0.0
775,578 - Psest_0706 0.14 -2.0
775,644 + Psest_0706 0.18 -0.3
775,645 - Psest_0706 0.18 +0.4
775,661 + Psest_0706 0.19 -2.5
775,797 + Psest_0706 0.28 -1.1
775,797 + Psest_0706 0.28 -1.5

Or see this region's nucleotide sequence