Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4039 and Psest_4040 are separated by 8 nucleotides Psest_4040 and Psest_4041 are separated by 41 nucleotides Psest_4041 and Psest_4042 overlap by 8 nucleotides Psest_4042 and Psest_4043 are separated by 14 nucleotides Psest_4043 and Psest_4044 are separated by 303 nucleotides
Psest_4039: Psest_4039 - putative toxin-antitoxin system antitoxin component, TIGR02293 family, at 4,212,104 to 4,212,568
_4039
Psest_4040: Psest_4040 - hypothetical protein, at 4,212,577 to 4,212,996
_4040
Psest_4041: Psest_4041 - hypothetical protein, at 4,213,038 to 4,213,289
_4041
Psest_4042: Psest_4042 - hypothetical protein, at 4,213,282 to 4,213,551
_4042
Psest_4043: Psest_4043 - Site-specific recombinases, DNA invertase Pin homologs, at 4,213,566 to 4,214,105
_4043
Psest_4044: Psest_4044 - type I site-specific deoxyribonuclease, HsdR family, at 4,214,409 to 4,217,558
_4044
Position (kb) 4213
4214
4215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4212.601 kb on + strand at 4212.602 kb on - strand at 4212.602 kb on - strand at 4212.602 kb on - strand at 4212.602 kb on - strand at 4212.602 kb on - strand at 4212.602 kb on - strand at 4212.605 kb on + strand at 4212.605 kb on + strand at 4212.605 kb on + strand at 4212.606 kb on - strand at 4212.606 kb on - strand at 4212.707 kb on + strand, within Psest_4040 at 4212.707 kb on + strand, within Psest_4040 at 4212.707 kb on + strand, within Psest_4040 at 4212.707 kb on + strand, within Psest_4040 at 4212.707 kb on + strand, within Psest_4040 at 4212.707 kb on + strand, within Psest_4040 at 4212.707 kb on + strand, within Psest_4040 at 4212.707 kb on + strand, within Psest_4040 at 4212.707 kb on + strand, within Psest_4040 at 4212.707 kb on + strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.708 kb on - strand, within Psest_4040 at 4212.734 kb on + strand, within Psest_4040 at 4212.734 kb on + strand, within Psest_4040 at 4212.762 kb on - strand, within Psest_4040 at 4212.762 kb on - strand, within Psest_4040 at 4212.762 kb on - strand, within Psest_4040 at 4212.772 kb on + strand, within Psest_4040 at 4212.773 kb on - strand, within Psest_4040 at 4212.785 kb on + strand, within Psest_4040 at 4212.786 kb on - strand, within Psest_4040 at 4212.868 kb on + strand, within Psest_4040 at 4212.868 kb on + strand, within Psest_4040 at 4212.868 kb on + strand, within Psest_4040 at 4212.869 kb on - strand, within Psest_4040 at 4212.869 kb on - strand, within Psest_4040 at 4212.893 kb on + strand, within Psest_4040 at 4212.894 kb on - strand, within Psest_4040 at 4212.894 kb on - strand, within Psest_4040 at 4212.974 kb on + strand at 4212.974 kb on + strand at 4212.974 kb on + strand at 4212.974 kb on + strand at 4212.974 kb on + strand at 4212.974 kb on + strand at 4212.975 kb on - strand at 4213.008 kb on + strand at 4213.008 kb on + strand at 4213.008 kb on + strand at 4213.008 kb on + strand at 4213.008 kb on + strand at 4213.008 kb on + strand at 4213.009 kb on - strand at 4213.009 kb on - strand at 4213.010 kb on + strand at 4213.010 kb on + strand at 4213.010 kb on + strand at 4213.011 kb on - strand at 4213.011 kb on - strand at 4213.011 kb on - strand at 4213.031 kb on + strand at 4213.031 kb on + strand at 4213.094 kb on + strand, within Psest_4041 at 4213.095 kb on - strand, within Psest_4041 at 4213.095 kb on - strand, within Psest_4041 at 4213.192 kb on + strand, within Psest_4041 at 4213.192 kb on + strand, within Psest_4041 at 4213.192 kb on + strand, within Psest_4041 at 4213.192 kb on + strand, within Psest_4041 at 4213.192 kb on + strand, within Psest_4041 at 4213.193 kb on - strand, within Psest_4041 at 4213.193 kb on - strand, within Psest_4041 at 4213.193 kb on - strand, within Psest_4041 at 4213.193 kb on - strand, within Psest_4041 at 4213.193 kb on - strand, within Psest_4041 at 4213.193 kb on - strand, within Psest_4041 at 4213.196 kb on + strand, within Psest_4041 at 4213.196 kb on + strand, within Psest_4041 at 4213.196 kb on + strand, within Psest_4041 at 4213.196 kb on + strand, within Psest_4041 at 4213.196 kb on + strand, within Psest_4041 at 4213.197 kb on - strand, within Psest_4041 at 4213.197 kb on - strand, within Psest_4041 at 4213.197 kb on - strand, within Psest_4041 at 4213.197 kb on - strand, within Psest_4041 at 4213.197 kb on - strand, within Psest_4041 at 4213.197 kb on - strand, within Psest_4041 at 4213.197 kb on - strand, within Psest_4041 at 4213.197 kb on - strand, within Psest_4041 at 4213.197 kb on - strand, within Psest_4041 at 4213.197 kb on - strand, within Psest_4041 at 4213.197 kb on - strand, within Psest_4041 at 4213.201 kb on - strand, within Psest_4041 at 4213.201 kb on - strand, within Psest_4041 at 4213.268 kb on + strand at 4213.269 kb on - strand at 4213.269 kb on - strand at 4213.269 kb on - strand at 4213.269 kb on - strand at 4213.269 kb on - strand at 4213.269 kb on - strand at 4213.272 kb on - strand at 4213.284 kb on - strand at 4213.523 kb on + strand, within Psest_4042 at 4213.524 kb on - strand, within Psest_4042 at 4213.524 kb on - strand, within Psest_4042 at 4213.573 kb on + strand at 4213.574 kb on - strand at 4213.580 kb on - strand at 4213.580 kb on - strand at 4213.614 kb on + strand at 4213.614 kb on + strand at 4213.614 kb on + strand at 4213.615 kb on - strand at 4213.657 kb on - strand, within Psest_4043 at 4213.657 kb on - strand, within Psest_4043 at 4213.665 kb on + strand, within Psest_4043 at 4214.083 kb on - strand at 4214.093 kb on - strand at 4214.150 kb on + strand at 4214.203 kb on + strand at 4214.203 kb on + strand at 4214.203 kb on + strand at 4214.251 kb on + strand at 4214.251 kb on + strand at 4214.251 kb on + strand at 4214.251 kb on + strand at 4214.251 kb on + strand at 4214.252 kb on - strand at 4214.252 kb on - strand at 4214.252 kb on - strand at 4214.252 kb on - strand at 4214.252 kb on - strand at 4214.252 kb on - strand at 4214.252 kb on - strand at 4214.252 kb on - strand at 4214.252 kb on - strand at 4214.253 kb on + strand at 4214.253 kb on + strand at 4214.253 kb on + strand at 4214.253 kb on + strand at 4214.254 kb on - strand at 4214.254 kb on - strand at 4214.254 kb on - strand at 4214.254 kb on - strand at 4214.254 kb on - strand at 4214.254 kb on - strand at 4214.382 kb on - strand at 4214.394 kb on + strand at 4214.668 kb on + strand at 4214.668 kb on + strand at 4214.668 kb on + strand at 4214.668 kb on + strand at 4214.864 kb on + strand, within Psest_4044 at 4214.997 kb on - strand, within Psest_4044
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 4,212,601 + -0.1 4,212,602 - -1.5 4,212,602 - +0.0 4,212,602 - +0.6 4,212,602 - -0.1 4,212,602 - -1.7 4,212,602 - +0.2 4,212,605 + -0.7 4,212,605 + -0.7 4,212,605 + +0.2 4,212,606 - +1.1 4,212,606 - -0.1 4,212,707 + Psest_4040 0.31 -0.4 4,212,707 + Psest_4040 0.31 -0.5 4,212,707 + Psest_4040 0.31 +0.4 4,212,707 + Psest_4040 0.31 -0.4 4,212,707 + Psest_4040 0.31 -0.1 4,212,707 + Psest_4040 0.31 +0.2 4,212,707 + Psest_4040 0.31 -1.0 4,212,707 + Psest_4040 0.31 -0.8 4,212,707 + Psest_4040 0.31 -2.2 4,212,707 + Psest_4040 0.31 +0.3 4,212,708 - Psest_4040 0.31 +0.3 4,212,708 - Psest_4040 0.31 -1.5 4,212,708 - Psest_4040 0.31 +0.1 4,212,708 - Psest_4040 0.31 -0.1 4,212,708 - Psest_4040 0.31 +0.7 4,212,708 - Psest_4040 0.31 +1.2 4,212,708 - Psest_4040 0.31 -0.4 4,212,708 - Psest_4040 0.31 -1.8 4,212,708 - Psest_4040 0.31 -1.1 4,212,708 - Psest_4040 0.31 -1.1 4,212,708 - Psest_4040 0.31 +1.6 4,212,708 - Psest_4040 0.31 +1.1 4,212,708 - Psest_4040 0.31 +1.2 4,212,734 + Psest_4040 0.37 +2.3 4,212,734 + Psest_4040 0.37 +1.0 4,212,762 - Psest_4040 0.44 -0.8 4,212,762 - Psest_4040 0.44 -2.9 4,212,762 - Psest_4040 0.44 -0.6 4,212,772 + Psest_4040 0.46 +0.7 4,212,773 - Psest_4040 0.47 -0.1 4,212,785 + Psest_4040 0.50 +0.2 4,212,786 - Psest_4040 0.50 +0.7 4,212,868 + Psest_4040 0.69 +1.2 4,212,868 + Psest_4040 0.69 +0.2 4,212,868 + Psest_4040 0.69 -1.3 4,212,869 - Psest_4040 0.70 +1.5 4,212,869 - Psest_4040 0.70 -1.2 4,212,893 + Psest_4040 0.75 +0.3 4,212,894 - Psest_4040 0.75 +0.4 4,212,894 - Psest_4040 0.75 +0.4 4,212,974 + +1.3 4,212,974 + -2.2 4,212,974 + -1.7 4,212,974 + +0.2 4,212,974 + +0.2 4,212,974 + -1.9 4,212,975 - -0.7 4,213,008 + -1.9 4,213,008 + +0.6 4,213,008 + +1.0 4,213,008 + -0.3 4,213,008 + -0.8 4,213,008 + +2.9 4,213,009 - +1.9 4,213,009 - -0.7 4,213,010 + +0.2 4,213,010 + +2.0 4,213,010 + -1.0 4,213,011 - -1.7 4,213,011 - -1.0 4,213,011 - -1.0 4,213,031 + -2.7 4,213,031 + +0.6 4,213,094 + Psest_4041 0.22 -0.5 4,213,095 - Psest_4041 0.23 -0.7 4,213,095 - Psest_4041 0.23 -1.3 4,213,192 + Psest_4041 0.61 -0.8 4,213,192 + Psest_4041 0.61 +1.7 4,213,192 + Psest_4041 0.61 -0.5 4,213,192 + Psest_4041 0.61 -2.2 4,213,192 + Psest_4041 0.61 -0.6 4,213,193 - Psest_4041 0.62 -1.2 4,213,193 - Psest_4041 0.62 -0.1 4,213,193 - Psest_4041 0.62 +1.4 4,213,193 - Psest_4041 0.62 +0.3 4,213,193 - Psest_4041 0.62 +0.2 4,213,193 - Psest_4041 0.62 +0.4 4,213,196 + Psest_4041 0.63 +0.3 4,213,196 + Psest_4041 0.63 +2.7 4,213,196 + Psest_4041 0.63 -0.2 4,213,196 + Psest_4041 0.63 +0.2 4,213,196 + Psest_4041 0.63 +1.1 4,213,197 - Psest_4041 0.63 -1.6 4,213,197 - Psest_4041 0.63 +0.2 4,213,197 - Psest_4041 0.63 +0.3 4,213,197 - Psest_4041 0.63 +0.1 4,213,197 - Psest_4041 0.63 -0.2 4,213,197 - Psest_4041 0.63 +0.5 4,213,197 - Psest_4041 0.63 -0.3 4,213,197 - Psest_4041 0.63 +0.2 4,213,197 - Psest_4041 0.63 +1.1 4,213,197 - Psest_4041 0.63 +1.7 4,213,197 - Psest_4041 0.63 +0.1 4,213,201 - Psest_4041 0.65 +0.4 4,213,201 - Psest_4041 0.65 -0.4 4,213,268 + -1.2 4,213,269 - +0.3 4,213,269 - +1.5 4,213,269 - +0.1 4,213,269 - -1.8 4,213,269 - +0.7 4,213,269 - -0.5 4,213,272 - -0.1 4,213,284 - -0.2 4,213,523 + Psest_4042 0.89 +0.3 4,213,524 - Psest_4042 0.90 -0.2 4,213,524 - Psest_4042 0.90 -0.8 4,213,573 + -0.1 4,213,574 - -1.2 4,213,580 - +0.0 4,213,580 - -1.5 4,213,614 + -0.8 4,213,614 + +0.2 4,213,614 + -0.7 4,213,615 - +0.3 4,213,657 - Psest_4043 0.17 -3.5 4,213,657 - Psest_4043 0.17 +0.9 4,213,665 + Psest_4043 0.18 +1.8 4,214,083 - +1.0 4,214,093 - +1.1 4,214,150 + -0.7 4,214,203 + -0.2 4,214,203 + -0.7 4,214,203 + -0.3 4,214,251 + -0.9 4,214,251 + +0.2 4,214,251 + -0.1 4,214,251 + -0.1 4,214,251 + -0.2 4,214,252 - -0.9 4,214,252 - +0.2 4,214,252 - -1.2 4,214,252 - -0.6 4,214,252 - +3.3 4,214,252 - +1.0 4,214,252 - +1.4 4,214,252 - +0.3 4,214,252 - +0.8 4,214,253 + +1.6 4,214,253 + -2.2 4,214,253 + +0.9 4,214,253 + +1.0 4,214,254 - +1.4 4,214,254 - -0.4 4,214,254 - +0.6 4,214,254 - -1.0 4,214,254 - +0.2 4,214,254 - -0.3 4,214,382 - -1.1 4,214,394 + +0.1 4,214,668 + -1.5 4,214,668 + +1.3 4,214,668 + -0.2 4,214,668 + -0.7 4,214,864 + Psest_4044 0.14 +1.8 4,214,997 - Psest_4044 0.19 +0.3
Or see this region's nucleotide sequence