Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3164

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3163 and Psest_3164 are separated by 341 nucleotidesPsest_3164 and Psest_3165 are separated by 231 nucleotides Psest_3163: Psest_3163 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 3,335,642 to 3,336,670 _3163 Psest_3164: Psest_3164 - Predicted esterase, at 3,337,012 to 3,337,668 _3164 Psest_3165: Psest_3165 - diguanylate cyclase (GGDEF) domain, at 3,337,900 to 3,338,760 _3165 Position (kb) 3337 3338Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3336.061 kb on - strand, within Psest_3163at 3336.153 kb on + strand, within Psest_3163at 3336.153 kb on + strand, within Psest_3163at 3336.154 kb on - strand, within Psest_3163at 3336.154 kb on - strand, within Psest_3163at 3336.177 kb on + strand, within Psest_3163at 3336.177 kb on + strand, within Psest_3163at 3336.177 kb on + strand, within Psest_3163at 3336.294 kb on + strand, within Psest_3163at 3336.294 kb on + strand, within Psest_3163at 3336.295 kb on - strand, within Psest_3163at 3336.295 kb on - strand, within Psest_3163at 3336.295 kb on - strand, within Psest_3163at 3336.295 kb on - strand, within Psest_3163at 3336.297 kb on + strand, within Psest_3163at 3336.297 kb on + strand, within Psest_3163at 3336.297 kb on + strand, within Psest_3163at 3336.297 kb on + strand, within Psest_3163at 3336.297 kb on + strand, within Psest_3163at 3336.297 kb on + strand, within Psest_3163at 3336.298 kb on - strand, within Psest_3163at 3336.355 kb on + strand, within Psest_3163at 3336.355 kb on + strand, within Psest_3163at 3336.356 kb on - strand, within Psest_3163at 3336.356 kb on - strand, within Psest_3163at 3336.356 kb on - strand, within Psest_3163at 3336.356 kb on - strand, within Psest_3163at 3336.356 kb on - strand, within Psest_3163at 3336.427 kb on - strand, within Psest_3163at 3336.427 kb on - strand, within Psest_3163at 3336.427 kb on - strand, within Psest_3163at 3336.427 kb on - strand, within Psest_3163at 3336.427 kb on - strand, within Psest_3163at 3336.693 kb on + strandat 3336.768 kb on - strandat 3336.777 kb on + strandat 3336.777 kb on + strandat 3336.777 kb on + strandat 3336.778 kb on - strandat 3336.778 kb on - strandat 3336.778 kb on - strandat 3336.778 kb on - strandat 3336.778 kb on - strandat 3336.778 kb on - strandat 3336.778 kb on - strandat 3336.913 kb on + strandat 3337.214 kb on - strand, within Psest_3164at 3337.214 kb on - strand, within Psest_3164at 3337.432 kb on + strand, within Psest_3164at 3337.433 kb on - strand, within Psest_3164at 3337.433 kb on - strand, within Psest_3164at 3337.433 kb on - strand, within Psest_3164at 3337.433 kb on - strand, within Psest_3164at 3337.523 kb on + strand, within Psest_3164at 3337.524 kb on - strand, within Psest_3164at 3337.559 kb on + strand, within Psest_3164at 3337.559 kb on + strand, within Psest_3164at 3337.559 kb on + strand, within Psest_3164at 3337.559 kb on + strand, within Psest_3164at 3337.560 kb on - strand, within Psest_3164at 3337.695 kb on + strandat 3337.696 kb on - strandat 3337.696 kb on - strandat 3337.696 kb on - strandat 3337.702 kb on + strandat 3337.719 kb on + strandat 3337.720 kb on - strandat 3337.720 kb on - strandat 3337.971 kb on + strandat 3337.971 kb on + strandat 3337.971 kb on + strandat 3337.972 kb on - strandat 3337.972 kb on - strandat 3337.972 kb on - strandat 3337.972 kb on - strandat 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.988 kb on + strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.989 kb on - strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.990 kb on + strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3337.991 kb on - strand, within Psest_3165at 3338.013 kb on - strand, within Psest_3165at 3338.037 kb on + strand, within Psest_3165at 3338.053 kb on + strand, within Psest_3165at 3338.116 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.219 kb on + strand, within Psest_3165at 3338.220 kb on - strand, within Psest_3165at 3338.220 kb on - strand, within Psest_3165at 3338.220 kb on - strand, within Psest_3165at 3338.220 kb on - strand, within Psest_3165at 3338.220 kb on - strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.322 kb on + strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.323 kb on - strand, within Psest_3165at 3338.407 kb on + strand, within Psest_3165at 3338.407 kb on + strand, within Psest_3165at 3338.407 kb on + strand, within Psest_3165at 3338.566 kb on - strand, within Psest_3165at 3338.651 kb on + strand, within Psest_3165

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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3,336,061 - Psest_3163 0.41 +0.6
3,336,153 + Psest_3163 0.50 +1.0
3,336,153 + Psest_3163 0.50 +0.1
3,336,154 - Psest_3163 0.50 -2.4
3,336,154 - Psest_3163 0.50 +1.5
3,336,177 + Psest_3163 0.52 -0.4
3,336,177 + Psest_3163 0.52 -0.4
3,336,177 + Psest_3163 0.52 -0.0
3,336,294 + Psest_3163 0.63 -0.8
3,336,294 + Psest_3163 0.63 +2.5
3,336,295 - Psest_3163 0.63 -0.7
3,336,295 - Psest_3163 0.63 +0.8
3,336,295 - Psest_3163 0.63 +0.6
3,336,295 - Psest_3163 0.63 +0.7
3,336,297 + Psest_3163 0.64 +0.7
3,336,297 + Psest_3163 0.64 +1.1
3,336,297 + Psest_3163 0.64 -0.0
3,336,297 + Psest_3163 0.64 +0.7
3,336,297 + Psest_3163 0.64 -0.1
3,336,297 + Psest_3163 0.64 +2.8
3,336,298 - Psest_3163 0.64 +0.2
3,336,355 + Psest_3163 0.69 -0.5
3,336,355 + Psest_3163 0.69 -0.1
3,336,356 - Psest_3163 0.69 -0.3
3,336,356 - Psest_3163 0.69 +0.1
3,336,356 - Psest_3163 0.69 +1.3
3,336,356 - Psest_3163 0.69 -0.7
3,336,356 - Psest_3163 0.69 -0.3
3,336,427 - Psest_3163 0.76 -0.8
3,336,427 - Psest_3163 0.76 -0.0
3,336,427 - Psest_3163 0.76 -1.3
3,336,427 - Psest_3163 0.76 -0.2
3,336,427 - Psest_3163 0.76 +1.0
3,336,693 + +0.4
3,336,768 - +0.2
3,336,777 + +0.8
3,336,777 + +0.6
3,336,777 + -1.3
3,336,778 - +1.7
3,336,778 - +1.2
3,336,778 - -2.3
3,336,778 - -2.6
3,336,778 - +1.2
3,336,778 - -1.5
3,336,778 - +0.6
3,336,913 + -0.3
3,337,214 - Psest_3164 0.31 +0.8
3,337,214 - Psest_3164 0.31 +1.0
3,337,432 + Psest_3164 0.64 +0.4
3,337,433 - Psest_3164 0.64 +1.7
3,337,433 - Psest_3164 0.64 +0.0
3,337,433 - Psest_3164 0.64 +0.4
3,337,433 - Psest_3164 0.64 -0.4
3,337,523 + Psest_3164 0.78 +0.5
3,337,524 - Psest_3164 0.78 -0.2
3,337,559 + Psest_3164 0.83 +0.7
3,337,559 + Psest_3164 0.83 +1.6
3,337,559 + Psest_3164 0.83 -0.4
3,337,559 + Psest_3164 0.83 +0.2
3,337,560 - Psest_3164 0.83 +1.2
3,337,695 + -0.6
3,337,696 - +1.5
3,337,696 - -1.1
3,337,696 - +0.4
3,337,702 + +1.4
3,337,719 + -1.0
3,337,720 - -0.4
3,337,720 - -0.2
3,337,971 + -1.9
3,337,971 + -1.1
3,337,971 + -0.2
3,337,972 - +0.9
3,337,972 - +0.8
3,337,972 - -0.4
3,337,972 - +0.2
3,337,988 + Psest_3165 0.10 +0.8
3,337,988 + Psest_3165 0.10 +0.5
3,337,988 + Psest_3165 0.10 -1.1
3,337,988 + Psest_3165 0.10 +0.6
3,337,988 + Psest_3165 0.10 +0.1
3,337,988 + Psest_3165 0.10 +0.3
3,337,988 + Psest_3165 0.10 +0.1
3,337,988 + Psest_3165 0.10 +0.4
3,337,988 + Psest_3165 0.10 -0.2
3,337,988 + Psest_3165 0.10 +0.6
3,337,988 + Psest_3165 0.10 +1.6
3,337,988 + Psest_3165 0.10 +1.8
3,337,988 + Psest_3165 0.10 +3.4
3,337,988 + Psest_3165 0.10 -0.8
3,337,988 + Psest_3165 0.10 +0.2
3,337,988 + Psest_3165 0.10 +0.3
3,337,988 + Psest_3165 0.10 -0.4
3,337,988 + Psest_3165 0.10 +0.2
3,337,988 + Psest_3165 0.10 -2.5
3,337,988 + Psest_3165 0.10 -2.7
3,337,988 + Psest_3165 0.10 -0.7
3,337,988 + Psest_3165 0.10 -0.0
3,337,988 + Psest_3165 0.10 +0.2
3,337,988 + Psest_3165 0.10 -1.2
3,337,989 - Psest_3165 0.10 -1.5
3,337,989 - Psest_3165 0.10 +0.9
3,337,989 - Psest_3165 0.10 -1.9
3,337,989 - Psest_3165 0.10 +0.2
3,337,989 - Psest_3165 0.10 +1.6
3,337,989 - Psest_3165 0.10 +0.9
3,337,989 - Psest_3165 0.10 +0.1
3,337,989 - Psest_3165 0.10 -0.4
3,337,989 - Psest_3165 0.10 -1.3
3,337,989 - Psest_3165 0.10 +0.8
3,337,989 - Psest_3165 0.10 +3.1
3,337,989 - Psest_3165 0.10 +0.1
3,337,989 - Psest_3165 0.10 +0.1
3,337,989 - Psest_3165 0.10 +0.8
3,337,989 - Psest_3165 0.10 -1.4
3,337,989 - Psest_3165 0.10 -0.4
3,337,989 - Psest_3165 0.10 -1.3
3,337,989 - Psest_3165 0.10 -0.5
3,337,989 - Psest_3165 0.10 -2.0
3,337,989 - Psest_3165 0.10 -0.6
3,337,990 + Psest_3165 0.10 +0.0
3,337,990 + Psest_3165 0.10 -1.6
3,337,990 + Psest_3165 0.10 +0.1
3,337,990 + Psest_3165 0.10 -0.5
3,337,990 + Psest_3165 0.10 -0.8
3,337,990 + Psest_3165 0.10 -0.4
3,337,990 + Psest_3165 0.10 +0.2
3,337,990 + Psest_3165 0.10 -0.2
3,337,990 + Psest_3165 0.10 -0.7
3,337,990 + Psest_3165 0.10 +1.8
3,337,990 + Psest_3165 0.10 -1.5
3,337,990 + Psest_3165 0.10 +1.1
3,337,990 + Psest_3165 0.10 -0.6
3,337,990 + Psest_3165 0.10 +1.1
3,337,990 + Psest_3165 0.10 +0.8
3,337,990 + Psest_3165 0.10 +1.8
3,337,990 + Psest_3165 0.10 +1.2
3,337,990 + Psest_3165 0.10 +1.0
3,337,990 + Psest_3165 0.10 +2.8
3,337,990 + Psest_3165 0.10 +1.3
3,337,990 + Psest_3165 0.10 +1.0
3,337,990 + Psest_3165 0.10 +0.2
3,337,990 + Psest_3165 0.10 +0.3
3,337,990 + Psest_3165 0.10 -0.4
3,337,990 + Psest_3165 0.10 +0.1
3,337,990 + Psest_3165 0.10 -0.3
3,337,990 + Psest_3165 0.10 +0.1
3,337,990 + Psest_3165 0.10 -1.6
3,337,990 + Psest_3165 0.10 +0.4
3,337,990 + Psest_3165 0.10 +0.7
3,337,990 + Psest_3165 0.10 +1.1
3,337,990 + Psest_3165 0.10 +0.9
3,337,990 + Psest_3165 0.10 -0.4
3,337,991 - Psest_3165 0.11 +0.2
3,337,991 - Psest_3165 0.11 -2.3
3,337,991 - Psest_3165 0.11 -0.2
3,337,991 - Psest_3165 0.11 +1.8
3,337,991 - Psest_3165 0.11 +0.1
3,337,991 - Psest_3165 0.11 -1.1
3,337,991 - Psest_3165 0.11 -0.8
3,337,991 - Psest_3165 0.11 -1.1
3,337,991 - Psest_3165 0.11 +0.5
3,337,991 - Psest_3165 0.11 +0.2
3,337,991 - Psest_3165 0.11 +0.1
3,337,991 - Psest_3165 0.11 +0.3
3,337,991 - Psest_3165 0.11 -2.3
3,337,991 - Psest_3165 0.11 -1.1
3,337,991 - Psest_3165 0.11 -1.2
3,337,991 - Psest_3165 0.11 +1.6
3,337,991 - Psest_3165 0.11 -0.6
3,337,991 - Psest_3165 0.11 -0.5
3,337,991 - Psest_3165 0.11 +0.2
3,337,991 - Psest_3165 0.11 -0.8
3,337,991 - Psest_3165 0.11 +1.8
3,337,991 - Psest_3165 0.11 -1.4
3,337,991 - Psest_3165 0.11 -0.6
3,337,991 - Psest_3165 0.11 -0.1
3,337,991 - Psest_3165 0.11 -1.1
3,337,991 - Psest_3165 0.11 -2.1
3,337,991 - Psest_3165 0.11 -1.5
3,337,991 - Psest_3165 0.11 +1.0
3,337,991 - Psest_3165 0.11 +0.9
3,338,013 - Psest_3165 0.13 -0.4
3,338,037 + Psest_3165 0.16 -0.8
3,338,053 + Psest_3165 0.18 -0.0
3,338,116 + Psest_3165 0.25 -1.2
3,338,219 + Psest_3165 0.37 +1.5
3,338,219 + Psest_3165 0.37 -0.1
3,338,219 + Psest_3165 0.37 -1.0
3,338,219 + Psest_3165 0.37 -0.3
3,338,219 + Psest_3165 0.37 +0.3
3,338,219 + Psest_3165 0.37 +0.9
3,338,219 + Psest_3165 0.37 -0.5
3,338,220 - Psest_3165 0.37 +0.1
3,338,220 - Psest_3165 0.37 +0.4
3,338,220 - Psest_3165 0.37 +0.5
3,338,220 - Psest_3165 0.37 +0.2
3,338,220 - Psest_3165 0.37 +1.9
3,338,322 + Psest_3165 0.49 +0.4
3,338,322 + Psest_3165 0.49 -0.2
3,338,322 + Psest_3165 0.49 +0.8
3,338,322 + Psest_3165 0.49 -0.4
3,338,322 + Psest_3165 0.49 +0.4
3,338,322 + Psest_3165 0.49 -0.8
3,338,322 + Psest_3165 0.49 -1.2
3,338,323 - Psest_3165 0.49 -0.7
3,338,323 - Psest_3165 0.49 -1.0
3,338,323 - Psest_3165 0.49 -1.2
3,338,323 - Psest_3165 0.49 +0.9
3,338,323 - Psest_3165 0.49 -1.5
3,338,323 - Psest_3165 0.49 -0.8
3,338,323 - Psest_3165 0.49 +0.5
3,338,323 - Psest_3165 0.49 -0.8
3,338,323 - Psest_3165 0.49 -0.8
3,338,323 - Psest_3165 0.49 +0.3
3,338,407 + Psest_3165 0.59 -0.7
3,338,407 + Psest_3165 0.59 -2.5
3,338,407 + Psest_3165 0.59 +0.8
3,338,566 - Psest_3165 0.77 +0.6
3,338,651 + Psest_3165 0.87 -0.1

Or see this region's nucleotide sequence