Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2893 and Psest_2894 are separated by 246 nucleotides Psest_2894 and Psest_2895 are separated by 49 nucleotides
Psest_2893: Psest_2893 - Arabinose efflux permease, at 3,089,230 to 3,090,708
_2893
Psest_2894: Psest_2894 - addiction module antidote protein, HigA family, at 3,090,955 to 3,091,335
_2894
Psest_2895: Psest_2895 - Uncharacterized conserved protein, at 3,091,385 to 3,092,956
_2895
Position (kb)
3090
3091
3092 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3090.074 kb on + strand, within Psest_2893 at 3090.074 kb on + strand, within Psest_2893 at 3090.075 kb on - strand, within Psest_2893 at 3090.075 kb on - strand, within Psest_2893 at 3090.075 kb on - strand, within Psest_2893 at 3090.167 kb on + strand, within Psest_2893 at 3090.167 kb on + strand, within Psest_2893 at 3090.223 kb on - strand, within Psest_2893 at 3090.259 kb on + strand, within Psest_2893 at 3090.259 kb on + strand, within Psest_2893 at 3090.259 kb on + strand, within Psest_2893 at 3090.260 kb on - strand, within Psest_2893 at 3090.260 kb on - strand, within Psest_2893 at 3090.260 kb on - strand, within Psest_2893 at 3090.419 kb on - strand, within Psest_2893 at 3090.419 kb on - strand, within Psest_2893 at 3090.476 kb on - strand, within Psest_2893 at 3090.476 kb on - strand, within Psest_2893 at 3090.874 kb on + strand at 3090.875 kb on - strand at 3090.875 kb on - strand at 3090.875 kb on - strand at 3090.875 kb on - strand at 3090.875 kb on - strand at 3090.875 kb on - strand at 3090.875 kb on - strand at 3090.914 kb on - strand at 3090.951 kb on - strand at 3091.049 kb on + strand, within Psest_2894 at 3091.050 kb on - strand, within Psest_2894 at 3091.050 kb on - strand, within Psest_2894 at 3091.244 kb on - strand, within Psest_2894 at 3091.297 kb on - strand, within Psest_2894 at 3091.329 kb on + strand at 3091.330 kb on - strand at 3091.330 kb on - strand at 3091.330 kb on - strand at 3091.330 kb on - strand at 3091.334 kb on - strand at 3091.392 kb on - strand at 3091.392 kb on - strand at 3091.433 kb on - strand at 3091.619 kb on + strand, within Psest_2895 at 3091.619 kb on + strand, within Psest_2895 at 3091.682 kb on - strand, within Psest_2895 at 3091.682 kb on - strand, within Psest_2895 at 3091.778 kb on - strand, within Psest_2895 at 3091.820 kb on - strand, within Psest_2895 at 3091.823 kb on + strand, within Psest_2895 at 3092.096 kb on - strand, within Psest_2895
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 3,090,074 + Psest_2893 0.57 +0.5 3,090,074 + Psest_2893 0.57 -0.7 3,090,075 - Psest_2893 0.57 +0.5 3,090,075 - Psest_2893 0.57 -1.0 3,090,075 - Psest_2893 0.57 +0.4 3,090,167 + Psest_2893 0.63 +0.4 3,090,167 + Psest_2893 0.63 +0.3 3,090,223 - Psest_2893 0.67 -0.2 3,090,259 + Psest_2893 0.70 +3.2 3,090,259 + Psest_2893 0.70 +0.6 3,090,259 + Psest_2893 0.70 +0.1 3,090,260 - Psest_2893 0.70 +0.4 3,090,260 - Psest_2893 0.70 +1.3 3,090,260 - Psest_2893 0.70 +0.2 3,090,419 - Psest_2893 0.80 +0.2 3,090,419 - Psest_2893 0.80 +0.9 3,090,476 - Psest_2893 0.84 -0.6 3,090,476 - Psest_2893 0.84 -0.9 3,090,874 + +0.3 3,090,875 - +0.3 3,090,875 - -0.1 3,090,875 - +0.6 3,090,875 - -0.7 3,090,875 - +0.7 3,090,875 - +1.6 3,090,875 - -1.7 3,090,914 - +0.7 3,090,951 - -0.3 3,091,049 + Psest_2894 0.25 +0.7 3,091,050 - Psest_2894 0.25 -0.3 3,091,050 - Psest_2894 0.25 +1.0 3,091,244 - Psest_2894 0.76 -1.2 3,091,297 - Psest_2894 0.90 +1.4 3,091,329 + -0.6 3,091,330 - +1.2 3,091,330 - +0.8 3,091,330 - -0.6 3,091,330 - +1.4 3,091,334 - +2.5 3,091,392 - -0.5 3,091,392 - +1.1 3,091,433 - +0.4 3,091,619 + Psest_2895 0.15 +0.2 3,091,619 + Psest_2895 0.15 -0.1 3,091,682 - Psest_2895 0.19 -1.4 3,091,682 - Psest_2895 0.19 -0.6 3,091,778 - Psest_2895 0.25 +0.8 3,091,820 - Psest_2895 0.28 +1.0 3,091,823 + Psest_2895 0.28 -1.0 3,092,096 - Psest_2895 0.45 +1.6
Or see this region's nucleotide sequence