Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2810

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2808 and Psest_2809 are separated by 19 nucleotidesPsest_2809 and Psest_2810 overlap by 4 nucleotidesPsest_2810 and Psest_2811 overlap by 1 nucleotides Psest_2808: Psest_2808 - Predicted membrane protein, at 2,997,477 to 2,998,412 _2808 Psest_2809: Psest_2809 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 2,998,432 to 2,999,109 _2809 Psest_2810: Psest_2810 - 5'/3'-nucleotidase SurE, at 2,999,106 to 2,999,855 _2810 Psest_2811: Psest_2811 - Uncharacterized conserved protein, at 2,999,855 to 3,000,895 _2811 Position (kb) 2999 3000Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2998.469 kb on - strandat 2998.638 kb on - strand, within Psest_2809at 2998.893 kb on + strand, within Psest_2809at 2998.893 kb on + strand, within Psest_2809at 2998.931 kb on + strand, within Psest_2809at 2998.931 kb on + strand, within Psest_2809at 2999.035 kb on + strand, within Psest_2809at 2999.035 kb on + strand, within Psest_2809at 2999.036 kb on - strand, within Psest_2809at 2999.188 kb on - strand, within Psest_2810at 2999.188 kb on - strand, within Psest_2810at 2999.191 kb on + strand, within Psest_2810at 2999.191 kb on + strand, within Psest_2810at 2999.192 kb on - strand, within Psest_2810at 2999.264 kb on - strand, within Psest_2810at 2999.393 kb on + strand, within Psest_2810at 2999.393 kb on + strand, within Psest_2810at 2999.393 kb on + strand, within Psest_2810at 2999.482 kb on - strand, within Psest_2810at 2999.604 kb on - strand, within Psest_2810at 2999.604 kb on - strand, within Psest_2810at 2999.604 kb on - strand, within Psest_2810at 2999.798 kb on - strandat 2999.821 kb on + strandat 2999.821 kb on + strandat 2999.822 kb on - strandat 2999.822 kb on - strandat 2999.822 kb on - strandat 2999.849 kb on + strandat 2999.850 kb on - strandat 3000.084 kb on - strand, within Psest_2811at 3000.273 kb on - strand, within Psest_2811at 3000.273 kb on - strand, within Psest_2811at 3000.273 kb on - strand, within Psest_2811at 3000.278 kb on - strand, within Psest_2811at 3000.288 kb on + strand, within Psest_2811at 3000.288 kb on + strand, within Psest_2811at 3000.288 kb on + strand, within Psest_2811at 3000.288 kb on + strand, within Psest_2811at 3000.288 kb on + strand, within Psest_2811at 3000.289 kb on - strand, within Psest_2811at 3000.289 kb on - strand, within Psest_2811at 3000.289 kb on - strand, within Psest_2811at 3000.289 kb on - strand, within Psest_2811at 3000.289 kb on - strand, within Psest_2811at 3000.289 kb on - strand, within Psest_2811at 3000.289 kb on - strand, within Psest_2811at 3000.292 kb on + strand, within Psest_2811at 3000.292 kb on + strand, within Psest_2811at 3000.293 kb on - strand, within Psest_2811at 3000.357 kb on + strand, within Psest_2811at 3000.414 kb on + strand, within Psest_2811at 3000.414 kb on + strand, within Psest_2811at 3000.414 kb on + strand, within Psest_2811at 3000.415 kb on - strand, within Psest_2811at 3000.669 kb on + strand, within Psest_2811at 3000.669 kb on + strand, within Psest_2811at 3000.670 kb on - strand, within Psest_2811at 3000.837 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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2,998,469 - +0.3
2,998,638 - Psest_2809 0.30 +0.2
2,998,893 + Psest_2809 0.68 +0.4
2,998,893 + Psest_2809 0.68 +0.5
2,998,931 + Psest_2809 0.74 +1.6
2,998,931 + Psest_2809 0.74 -1.2
2,999,035 + Psest_2809 0.89 -1.4
2,999,035 + Psest_2809 0.89 -1.0
2,999,036 - Psest_2809 0.89 -1.1
2,999,188 - Psest_2810 0.11 +1.1
2,999,188 - Psest_2810 0.11 +0.9
2,999,191 + Psest_2810 0.11 +1.0
2,999,191 + Psest_2810 0.11 +0.5
2,999,192 - Psest_2810 0.11 +0.6
2,999,264 - Psest_2810 0.21 +1.7
2,999,393 + Psest_2810 0.38 +0.7
2,999,393 + Psest_2810 0.38 +3.0
2,999,393 + Psest_2810 0.38 -0.2
2,999,482 - Psest_2810 0.50 +1.6
2,999,604 - Psest_2810 0.66 -1.3
2,999,604 - Psest_2810 0.66 +1.3
2,999,604 - Psest_2810 0.66 -0.0
2,999,798 - +2.0
2,999,821 + +1.8
2,999,821 + +1.2
2,999,822 - +1.4
2,999,822 - +0.1
2,999,822 - -0.3
2,999,849 + -2.3
2,999,850 - -0.2
3,000,084 - Psest_2811 0.22 -0.2
3,000,273 - Psest_2811 0.40 +0.2
3,000,273 - Psest_2811 0.40 -0.6
3,000,273 - Psest_2811 0.40 -0.2
3,000,278 - Psest_2811 0.41 +1.6
3,000,288 + Psest_2811 0.42 +0.5
3,000,288 + Psest_2811 0.42 +0.8
3,000,288 + Psest_2811 0.42 -0.7
3,000,288 + Psest_2811 0.42 -0.1
3,000,288 + Psest_2811 0.42 -0.0
3,000,289 - Psest_2811 0.42 +1.3
3,000,289 - Psest_2811 0.42 -0.7
3,000,289 - Psest_2811 0.42 -0.2
3,000,289 - Psest_2811 0.42 +0.2
3,000,289 - Psest_2811 0.42 +1.3
3,000,289 - Psest_2811 0.42 -0.6
3,000,289 - Psest_2811 0.42 +0.1
3,000,292 + Psest_2811 0.42 +0.2
3,000,292 + Psest_2811 0.42 +0.7
3,000,293 - Psest_2811 0.42 -0.8
3,000,357 + Psest_2811 0.48 +0.5
3,000,414 + Psest_2811 0.54 -1.7
3,000,414 + Psest_2811 0.54 -0.0
3,000,414 + Psest_2811 0.54 +0.9
3,000,415 - Psest_2811 0.54 -0.5
3,000,669 + Psest_2811 0.78 +0.6
3,000,669 + Psest_2811 0.78 +2.6
3,000,670 - Psest_2811 0.78 +0.1
3,000,837 - -0.1

Or see this region's nucleotide sequence