Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2622

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2620 and Psest_2621 overlap by 7 nucleotidesPsest_2621 and Psest_2622 overlap by 1 nucleotidesPsest_2622 and Psest_2623 are separated by 11 nucleotides Psest_2620: Psest_2620 - Flp pilus assembly protein, ATPase CpaE, at 2,803,028 to 2,804,257 _2620 Psest_2621: Psest_2621 - TadE-like protein., at 2,804,251 to 2,804,754 _2621 Psest_2622: Psest_2622 - TadE-like protein., at 2,804,754 to 2,805,224 _2622 Psest_2623: Psest_2623 - Flp pilus assembly protein TadG, at 2,805,236 to 2,806,570 _2623 Position (kb) 2804 2805 2806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2804.401 kb on + strand, within Psest_2621at 2804.401 kb on + strand, within Psest_2621at 2804.401 kb on + strand, within Psest_2621at 2804.401 kb on + strand, within Psest_2621at 2804.401 kb on + strand, within Psest_2621at 2804.402 kb on - strand, within Psest_2621at 2804.402 kb on - strand, within Psest_2621at 2804.402 kb on - strand, within Psest_2621at 2804.402 kb on - strand, within Psest_2621at 2804.429 kb on - strand, within Psest_2621at 2804.481 kb on - strand, within Psest_2621at 2804.481 kb on - strand, within Psest_2621at 2804.857 kb on + strand, within Psest_2622at 2804.858 kb on - strand, within Psest_2622at 2804.858 kb on - strand, within Psest_2622at 2804.968 kb on + strand, within Psest_2622at 2804.968 kb on + strand, within Psest_2622at 2804.968 kb on + strand, within Psest_2622at 2804.969 kb on - strand, within Psest_2622at 2805.250 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.274 kb on - strandat 2805.282 kb on + strandat 2805.282 kb on + strandat 2805.282 kb on + strandat 2805.282 kb on + strandat 2805.282 kb on + strandat 2805.283 kb on - strandat 2805.283 kb on - strandat 2805.332 kb on + strandat 2805.497 kb on + strand, within Psest_2623at 2805.498 kb on - strand, within Psest_2623at 2805.498 kb on - strand, within Psest_2623at 2805.597 kb on + strand, within Psest_2623at 2805.598 kb on - strand, within Psest_2623at 2805.598 kb on - strand, within Psest_2623at 2805.598 kb on - strand, within Psest_2623at 2805.598 kb on - strand, within Psest_2623at 2805.599 kb on + strand, within Psest_2623at 2805.747 kb on + strand, within Psest_2623at 2805.747 kb on + strand, within Psest_2623at 2805.748 kb on - strand, within Psest_2623at 2805.748 kb on - strand, within Psest_2623at 2806.008 kb on + strand, within Psest_2623at 2806.008 kb on + strand, within Psest_2623at 2806.009 kb on - strand, within Psest_2623at 2806.009 kb on - strand, within Psest_2623at 2806.016 kb on - strand, within Psest_2623at 2806.121 kb on - strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.155 kb on + strand, within Psest_2623at 2806.156 kb on - strand, within Psest_2623at 2806.156 kb on - strand, within Psest_2623at 2806.160 kb on - strand, within Psest_2623at 2806.160 kb on - strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.175 kb on + strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.176 kb on - strand, within Psest_2623at 2806.179 kb on + strand, within Psest_2623at 2806.179 kb on + strand, within Psest_2623at 2806.180 kb on - strand, within Psest_2623at 2806.180 kb on - strand, within Psest_2623at 2806.180 kb on - strand, within Psest_2623

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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2,804,401 + Psest_2621 0.30 +0.5
2,804,401 + Psest_2621 0.30 +1.3
2,804,401 + Psest_2621 0.30 +0.3
2,804,401 + Psest_2621 0.30 -0.2
2,804,401 + Psest_2621 0.30 +1.2
2,804,402 - Psest_2621 0.30 +0.5
2,804,402 - Psest_2621 0.30 +0.0
2,804,402 - Psest_2621 0.30 -2.9
2,804,402 - Psest_2621 0.30 +0.0
2,804,429 - Psest_2621 0.35 -0.1
2,804,481 - Psest_2621 0.46 -1.0
2,804,481 - Psest_2621 0.46 +0.6
2,804,857 + Psest_2622 0.22 +0.6
2,804,858 - Psest_2622 0.22 +1.4
2,804,858 - Psest_2622 0.22 +2.3
2,804,968 + Psest_2622 0.45 +1.2
2,804,968 + Psest_2622 0.45 +0.3
2,804,968 + Psest_2622 0.45 +0.0
2,804,969 - Psest_2622 0.46 +0.0
2,805,250 + -0.4
2,805,273 + +1.3
2,805,273 + +0.3
2,805,273 + -0.8
2,805,273 + -0.4
2,805,273 + -0.3
2,805,273 + -2.7
2,805,273 + +0.4
2,805,273 + -0.1
2,805,273 + +0.7
2,805,273 + +0.1
2,805,274 - -0.1
2,805,274 - +1.4
2,805,274 - +2.4
2,805,274 - +1.7
2,805,274 - +1.8
2,805,274 - -0.4
2,805,274 - +0.2
2,805,274 - +1.3
2,805,274 - +0.3
2,805,274 - +0.2
2,805,274 - +0.4
2,805,274 - -0.8
2,805,274 - +0.7
2,805,274 - -0.8
2,805,274 - +0.2
2,805,282 + +0.4
2,805,282 + +1.5
2,805,282 + +0.8
2,805,282 + -0.3
2,805,282 + +0.5
2,805,283 - -1.4
2,805,283 - +0.3
2,805,332 + -0.8
2,805,497 + Psest_2623 0.20 -0.2
2,805,498 - Psest_2623 0.20 +0.5
2,805,498 - Psest_2623 0.20 +0.1
2,805,597 + Psest_2623 0.27 +1.2
2,805,598 - Psest_2623 0.27 +0.6
2,805,598 - Psest_2623 0.27 +0.6
2,805,598 - Psest_2623 0.27 +1.4
2,805,598 - Psest_2623 0.27 -0.5
2,805,599 + Psest_2623 0.27 -0.2
2,805,747 + Psest_2623 0.38 -2.1
2,805,747 + Psest_2623 0.38 -0.2
2,805,748 - Psest_2623 0.38 +0.9
2,805,748 - Psest_2623 0.38 +0.0
2,806,008 + Psest_2623 0.58 +0.6
2,806,008 + Psest_2623 0.58 -2.4
2,806,009 - Psest_2623 0.58 +0.2
2,806,009 - Psest_2623 0.58 +0.2
2,806,016 - Psest_2623 0.58 -0.1
2,806,121 - Psest_2623 0.66 +0.2
2,806,155 + Psest_2623 0.69 +1.2
2,806,155 + Psest_2623 0.69 +2.1
2,806,155 + Psest_2623 0.69 +0.9
2,806,155 + Psest_2623 0.69 +0.1
2,806,155 + Psest_2623 0.69 -1.4
2,806,156 - Psest_2623 0.69 -1.1
2,806,156 - Psest_2623 0.69 -1.1
2,806,160 - Psest_2623 0.69 -0.1
2,806,160 - Psest_2623 0.69 +2.0
2,806,175 + Psest_2623 0.70 -0.7
2,806,175 + Psest_2623 0.70 -0.6
2,806,175 + Psest_2623 0.70 -1.0
2,806,175 + Psest_2623 0.70 -0.5
2,806,175 + Psest_2623 0.70 -0.1
2,806,175 + Psest_2623 0.70 -0.4
2,806,175 + Psest_2623 0.70 +0.2
2,806,175 + Psest_2623 0.70 -0.6
2,806,176 - Psest_2623 0.70 -1.0
2,806,176 - Psest_2623 0.70 -0.0
2,806,176 - Psest_2623 0.70 +0.4
2,806,176 - Psest_2623 0.70 -0.3
2,806,176 - Psest_2623 0.70 +0.3
2,806,176 - Psest_2623 0.70 +0.3
2,806,176 - Psest_2623 0.70 +1.5
2,806,176 - Psest_2623 0.70 +0.6
2,806,179 + Psest_2623 0.71 -0.3
2,806,179 + Psest_2623 0.71 -1.4
2,806,180 - Psest_2623 0.71 -2.1
2,806,180 - Psest_2623 0.71 +1.6
2,806,180 - Psest_2623 0.71 -1.5

Or see this region's nucleotide sequence