Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2620 and Psest_2621 overlap by 7 nucleotides Psest_2621 and Psest_2622 overlap by 1 nucleotides Psest_2622 and Psest_2623 are separated by 11 nucleotides
Psest_2620: Psest_2620 - Flp pilus assembly protein, ATPase CpaE, at 2,803,028 to 2,804,257
_2620
Psest_2621: Psest_2621 - TadE-like protein., at 2,804,251 to 2,804,754
_2621
Psest_2622: Psest_2622 - TadE-like protein., at 2,804,754 to 2,805,224
_2622
Psest_2623: Psest_2623 - Flp pilus assembly protein TadG, at 2,805,236 to 2,806,570
_2623
Position (kb)
2804
2805
2806 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2804.401 kb on + strand, within Psest_2621 at 2804.401 kb on + strand, within Psest_2621 at 2804.401 kb on + strand, within Psest_2621 at 2804.401 kb on + strand, within Psest_2621 at 2804.401 kb on + strand, within Psest_2621 at 2804.402 kb on - strand, within Psest_2621 at 2804.402 kb on - strand, within Psest_2621 at 2804.402 kb on - strand, within Psest_2621 at 2804.402 kb on - strand, within Psest_2621 at 2804.429 kb on - strand, within Psest_2621 at 2804.481 kb on - strand, within Psest_2621 at 2804.481 kb on - strand, within Psest_2621 at 2804.857 kb on + strand, within Psest_2622 at 2804.858 kb on - strand, within Psest_2622 at 2804.858 kb on - strand, within Psest_2622 at 2804.968 kb on + strand, within Psest_2622 at 2804.968 kb on + strand, within Psest_2622 at 2804.968 kb on + strand, within Psest_2622 at 2804.969 kb on - strand, within Psest_2622 at 2805.250 kb on + strand at 2805.273 kb on + strand at 2805.273 kb on + strand at 2805.273 kb on + strand at 2805.273 kb on + strand at 2805.273 kb on + strand at 2805.273 kb on + strand at 2805.273 kb on + strand at 2805.273 kb on + strand at 2805.273 kb on + strand at 2805.273 kb on + strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.274 kb on - strand at 2805.282 kb on + strand at 2805.282 kb on + strand at 2805.282 kb on + strand at 2805.282 kb on + strand at 2805.282 kb on + strand at 2805.283 kb on - strand at 2805.283 kb on - strand at 2805.332 kb on + strand at 2805.497 kb on + strand, within Psest_2623 at 2805.498 kb on - strand, within Psest_2623 at 2805.498 kb on - strand, within Psest_2623 at 2805.597 kb on + strand, within Psest_2623 at 2805.598 kb on - strand, within Psest_2623 at 2805.598 kb on - strand, within Psest_2623 at 2805.598 kb on - strand, within Psest_2623 at 2805.598 kb on - strand, within Psest_2623 at 2805.599 kb on + strand, within Psest_2623 at 2805.747 kb on + strand, within Psest_2623 at 2805.747 kb on + strand, within Psest_2623 at 2805.748 kb on - strand, within Psest_2623 at 2805.748 kb on - strand, within Psest_2623 at 2806.008 kb on + strand, within Psest_2623 at 2806.008 kb on + strand, within Psest_2623 at 2806.009 kb on - strand, within Psest_2623 at 2806.009 kb on - strand, within Psest_2623 at 2806.016 kb on - strand, within Psest_2623 at 2806.121 kb on - strand, within Psest_2623 at 2806.155 kb on + strand, within Psest_2623 at 2806.155 kb on + strand, within Psest_2623 at 2806.155 kb on + strand, within Psest_2623 at 2806.155 kb on + strand, within Psest_2623 at 2806.155 kb on + strand, within Psest_2623 at 2806.156 kb on - strand, within Psest_2623 at 2806.156 kb on - strand, within Psest_2623 at 2806.160 kb on - strand, within Psest_2623 at 2806.160 kb on - strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.175 kb on + strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.176 kb on - strand, within Psest_2623 at 2806.179 kb on + strand, within Psest_2623 at 2806.179 kb on + strand, within Psest_2623 at 2806.180 kb on - strand, within Psest_2623 at 2806.180 kb on - strand, within Psest_2623 at 2806.180 kb on - strand, within Psest_2623
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 2,804,401 + Psest_2621 0.30 +0.5 2,804,401 + Psest_2621 0.30 +1.3 2,804,401 + Psest_2621 0.30 +0.3 2,804,401 + Psest_2621 0.30 -0.2 2,804,401 + Psest_2621 0.30 +1.2 2,804,402 - Psest_2621 0.30 +0.5 2,804,402 - Psest_2621 0.30 +0.0 2,804,402 - Psest_2621 0.30 -2.9 2,804,402 - Psest_2621 0.30 +0.0 2,804,429 - Psest_2621 0.35 -0.1 2,804,481 - Psest_2621 0.46 -1.0 2,804,481 - Psest_2621 0.46 +0.6 2,804,857 + Psest_2622 0.22 +0.6 2,804,858 - Psest_2622 0.22 +1.4 2,804,858 - Psest_2622 0.22 +2.3 2,804,968 + Psest_2622 0.45 +1.2 2,804,968 + Psest_2622 0.45 +0.3 2,804,968 + Psest_2622 0.45 +0.0 2,804,969 - Psest_2622 0.46 +0.0 2,805,250 + -0.4 2,805,273 + +1.3 2,805,273 + +0.3 2,805,273 + -0.8 2,805,273 + -0.4 2,805,273 + -0.3 2,805,273 + -2.7 2,805,273 + +0.4 2,805,273 + -0.1 2,805,273 + +0.7 2,805,273 + +0.1 2,805,274 - -0.1 2,805,274 - +1.4 2,805,274 - +2.4 2,805,274 - +1.7 2,805,274 - +1.8 2,805,274 - -0.4 2,805,274 - +0.2 2,805,274 - +1.3 2,805,274 - +0.3 2,805,274 - +0.2 2,805,274 - +0.4 2,805,274 - -0.8 2,805,274 - +0.7 2,805,274 - -0.8 2,805,274 - +0.2 2,805,282 + +0.4 2,805,282 + +1.5 2,805,282 + +0.8 2,805,282 + -0.3 2,805,282 + +0.5 2,805,283 - -1.4 2,805,283 - +0.3 2,805,332 + -0.8 2,805,497 + Psest_2623 0.20 -0.2 2,805,498 - Psest_2623 0.20 +0.5 2,805,498 - Psest_2623 0.20 +0.1 2,805,597 + Psest_2623 0.27 +1.2 2,805,598 - Psest_2623 0.27 +0.6 2,805,598 - Psest_2623 0.27 +0.6 2,805,598 - Psest_2623 0.27 +1.4 2,805,598 - Psest_2623 0.27 -0.5 2,805,599 + Psest_2623 0.27 -0.2 2,805,747 + Psest_2623 0.38 -2.1 2,805,747 + Psest_2623 0.38 -0.2 2,805,748 - Psest_2623 0.38 +0.9 2,805,748 - Psest_2623 0.38 +0.0 2,806,008 + Psest_2623 0.58 +0.6 2,806,008 + Psest_2623 0.58 -2.4 2,806,009 - Psest_2623 0.58 +0.2 2,806,009 - Psest_2623 0.58 +0.2 2,806,016 - Psest_2623 0.58 -0.1 2,806,121 - Psest_2623 0.66 +0.2 2,806,155 + Psest_2623 0.69 +1.2 2,806,155 + Psest_2623 0.69 +2.1 2,806,155 + Psest_2623 0.69 +0.9 2,806,155 + Psest_2623 0.69 +0.1 2,806,155 + Psest_2623 0.69 -1.4 2,806,156 - Psest_2623 0.69 -1.1 2,806,156 - Psest_2623 0.69 -1.1 2,806,160 - Psest_2623 0.69 -0.1 2,806,160 - Psest_2623 0.69 +2.0 2,806,175 + Psest_2623 0.70 -0.7 2,806,175 + Psest_2623 0.70 -0.6 2,806,175 + Psest_2623 0.70 -1.0 2,806,175 + Psest_2623 0.70 -0.5 2,806,175 + Psest_2623 0.70 -0.1 2,806,175 + Psest_2623 0.70 -0.4 2,806,175 + Psest_2623 0.70 +0.2 2,806,175 + Psest_2623 0.70 -0.6 2,806,176 - Psest_2623 0.70 -1.0 2,806,176 - Psest_2623 0.70 -0.0 2,806,176 - Psest_2623 0.70 +0.4 2,806,176 - Psest_2623 0.70 -0.3 2,806,176 - Psest_2623 0.70 +0.3 2,806,176 - Psest_2623 0.70 +0.3 2,806,176 - Psest_2623 0.70 +1.5 2,806,176 - Psest_2623 0.70 +0.6 2,806,179 + Psest_2623 0.71 -0.3 2,806,179 + Psest_2623 0.71 -1.4 2,806,180 - Psest_2623 0.71 -2.1 2,806,180 - Psest_2623 0.71 +1.6 2,806,180 - Psest_2623 0.71 -1.5
Or see this region's nucleotide sequence