Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2389 and Psest_2390 overlap by 4 nucleotides Psest_2390 and Psest_2391 are separated by 85 nucleotides Psest_2391 and Psest_2392 are separated by 173 nucleotides
Psest_2389: Psest_2389 - Na+/melibiose symporter and related transporters, at 2,540,586 to 2,541,824
_2389
Psest_2390: Psest_2390 - hypothetical protein, at 2,541,821 to 2,542,348
_2390
Psest_2391: Psest_2391 - PAS domain S-box, at 2,542,434 to 2,542,880
_2391
Psest_2392: Psest_2392 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 2,543,054 to 2,545,714
_2392
Position (kb)
2542
2543 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2541.453 kb on - strand, within Psest_2389 at 2541.621 kb on + strand, within Psest_2389 at 2541.622 kb on - strand, within Psest_2389 at 2541.744 kb on + strand at 2541.838 kb on - strand at 2541.838 kb on - strand at 2541.922 kb on + strand, within Psest_2390 at 2541.922 kb on + strand, within Psest_2390 at 2541.926 kb on + strand, within Psest_2390 at 2541.927 kb on - strand, within Psest_2390 at 2541.927 kb on - strand, within Psest_2390 at 2541.927 kb on - strand, within Psest_2390 at 2541.927 kb on - strand, within Psest_2390 at 2541.927 kb on - strand, within Psest_2390 at 2541.927 kb on - strand, within Psest_2390 at 2541.927 kb on - strand, within Psest_2390 at 2541.927 kb on - strand, within Psest_2390 at 2541.927 kb on - strand, within Psest_2390 at 2542.220 kb on + strand, within Psest_2390 at 2542.221 kb on - strand, within Psest_2390 at 2542.247 kb on + strand, within Psest_2390 at 2542.247 kb on + strand, within Psest_2390 at 2542.247 kb on + strand, within Psest_2390 at 2542.248 kb on - strand, within Psest_2390 at 2542.248 kb on - strand, within Psest_2390 at 2542.248 kb on - strand, within Psest_2390 at 2542.248 kb on - strand, within Psest_2390 at 2542.248 kb on - strand, within Psest_2390 at 2542.248 kb on - strand, within Psest_2390 at 2542.398 kb on + strand at 2542.527 kb on + strand, within Psest_2391 at 2542.528 kb on - strand, within Psest_2391 at 2542.689 kb on + strand, within Psest_2391 at 2542.689 kb on + strand, within Psest_2391 at 2542.689 kb on + strand, within Psest_2391 at 2542.690 kb on - strand, within Psest_2391 at 2542.764 kb on + strand, within Psest_2391 at 2542.764 kb on + strand, within Psest_2391 at 2542.764 kb on + strand, within Psest_2391 at 2542.765 kb on - strand, within Psest_2391 at 2542.765 kb on - strand, within Psest_2391 at 2542.902 kb on + strand at 2542.903 kb on - strand at 2542.954 kb on + strand at 2542.954 kb on + strand at 2542.954 kb on + strand at 2542.955 kb on - strand at 2542.960 kb on - strand at 2542.960 kb on - strand at 2543.263 kb on + strand at 2543.293 kb on - strand at 2543.355 kb on + strand, within Psest_2392 at 2543.370 kb on + strand, within Psest_2392 at 2543.405 kb on + strand, within Psest_2392 at 2543.405 kb on + strand, within Psest_2392 at 2543.601 kb on + strand, within Psest_2392 at 2543.644 kb on - strand, within Psest_2392 at 2543.723 kb on + strand, within Psest_2392 at 2543.723 kb on + strand, within Psest_2392 at 2543.724 kb on - strand, within Psest_2392 at 2543.724 kb on - strand, within Psest_2392 at 2543.724 kb on - strand, within Psest_2392
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 2,541,453 - Psest_2389 0.70 +0.7 2,541,621 + Psest_2389 0.84 +1.0 2,541,622 - Psest_2389 0.84 +1.3 2,541,744 + -0.9 2,541,838 - +1.3 2,541,838 - +0.6 2,541,922 + Psest_2390 0.19 +1.6 2,541,922 + Psest_2390 0.19 -1.7 2,541,926 + Psest_2390 0.20 -2.9 2,541,927 - Psest_2390 0.20 -0.3 2,541,927 - Psest_2390 0.20 +0.5 2,541,927 - Psest_2390 0.20 -1.1 2,541,927 - Psest_2390 0.20 -1.2 2,541,927 - Psest_2390 0.20 +1.5 2,541,927 - Psest_2390 0.20 -0.6 2,541,927 - Psest_2390 0.20 -0.2 2,541,927 - Psest_2390 0.20 +1.0 2,541,927 - Psest_2390 0.20 +0.5 2,542,220 + Psest_2390 0.76 -0.7 2,542,221 - Psest_2390 0.76 +0.9 2,542,247 + Psest_2390 0.81 -0.7 2,542,247 + Psest_2390 0.81 -2.4 2,542,247 + Psest_2390 0.81 -0.1 2,542,248 - Psest_2390 0.81 +0.6 2,542,248 - Psest_2390 0.81 -1.2 2,542,248 - Psest_2390 0.81 +0.4 2,542,248 - Psest_2390 0.81 +0.8 2,542,248 - Psest_2390 0.81 -0.5 2,542,248 - Psest_2390 0.81 +0.4 2,542,398 + +1.3 2,542,527 + Psest_2391 0.21 +0.2 2,542,528 - Psest_2391 0.21 +0.1 2,542,689 + Psest_2391 0.57 -0.2 2,542,689 + Psest_2391 0.57 +0.8 2,542,689 + Psest_2391 0.57 -1.4 2,542,690 - Psest_2391 0.57 -0.8 2,542,764 + Psest_2391 0.74 -2.2 2,542,764 + Psest_2391 0.74 -1.8 2,542,764 + Psest_2391 0.74 -1.4 2,542,765 - Psest_2391 0.74 +0.4 2,542,765 - Psest_2391 0.74 +0.6 2,542,902 + -0.6 2,542,903 - -0.4 2,542,954 + +0.2 2,542,954 + +0.1 2,542,954 + -1.5 2,542,955 - +0.1 2,542,960 - -0.7 2,542,960 - +1.4 2,543,263 + +0.8 2,543,293 - +0.9 2,543,355 + Psest_2392 0.11 +1.5 2,543,370 + Psest_2392 0.12 -0.1 2,543,405 + Psest_2392 0.13 -0.8 2,543,405 + Psest_2392 0.13 -1.5 2,543,601 + Psest_2392 0.21 +2.3 2,543,644 - Psest_2392 0.22 +1.0 2,543,723 + Psest_2392 0.25 +0.8 2,543,723 + Psest_2392 0.25 +0.1 2,543,724 - Psest_2392 0.25 -0.3 2,543,724 - Psest_2392 0.25 -0.5 2,543,724 - Psest_2392 0.25 -1.4
Or see this region's nucleotide sequence