Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2324

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2322 and Psest_2323 are separated by 171 nucleotidesPsest_2323 and Psest_2324 are separated by 5 nucleotidesPsest_2324 and Psest_2325 are separated by 3 nucleotides Psest_2322: Psest_2322 - Transcriptional regulators, at 2,476,141 to 2,476,866 _2322 Psest_2323: Psest_2323 - Uncharacterized protein conserved in archaea, at 2,477,038 to 2,477,670 _2323 Psest_2324: Psest_2324 - hypothetical protein, at 2,477,676 to 2,479,202 _2324 Psest_2325: Psest_2325 - alpha-L-glutamate ligase-related protein, at 2,479,206 to 2,480,189 _2325 Position (kb) 2477 2478 2479 2480Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2476.715 kb on + strand, within Psest_2322at 2476.715 kb on + strand, within Psest_2322at 2476.716 kb on - strand, within Psest_2322at 2476.716 kb on - strand, within Psest_2322at 2476.911 kb on + strandat 2476.911 kb on + strandat 2476.958 kb on - strandat 2476.981 kb on - strandat 2477.042 kb on + strandat 2477.042 kb on + strandat 2477.043 kb on - strandat 2477.043 kb on - strandat 2477.043 kb on - strandat 2477.043 kb on - strandat 2477.142 kb on + strand, within Psest_2323at 2477.142 kb on + strand, within Psest_2323at 2477.142 kb on + strand, within Psest_2323at 2477.143 kb on - strand, within Psest_2323at 2477.169 kb on - strand, within Psest_2323at 2477.169 kb on - strand, within Psest_2323at 2477.169 kb on - strand, within Psest_2323at 2477.212 kb on + strand, within Psest_2323at 2477.212 kb on + strand, within Psest_2323at 2477.212 kb on + strand, within Psest_2323at 2477.212 kb on + strand, within Psest_2323at 2477.212 kb on + strand, within Psest_2323at 2477.213 kb on - strand, within Psest_2323at 2477.213 kb on - strand, within Psest_2323at 2477.213 kb on - strand, within Psest_2323at 2477.213 kb on - strand, within Psest_2323at 2477.213 kb on - strand, within Psest_2323at 2477.298 kb on + strand, within Psest_2323at 2477.298 kb on + strand, within Psest_2323at 2477.298 kb on + strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.354 kb on - strand, within Psest_2323at 2477.354 kb on - strand, within Psest_2323at 2477.354 kb on - strand, within Psest_2323at 2477.354 kb on - strand, within Psest_2323at 2477.354 kb on - strand, within Psest_2323at 2477.354 kb on - strand, within Psest_2323at 2477.461 kb on + strand, within Psest_2323at 2477.461 kb on + strand, within Psest_2323at 2477.461 kb on + strand, within Psest_2323at 2477.461 kb on + strand, within Psest_2323at 2477.462 kb on - strand, within Psest_2323at 2477.462 kb on - strand, within Psest_2323at 2477.462 kb on - strand, within Psest_2323at 2477.508 kb on + strand, within Psest_2323at 2477.508 kb on + strand, within Psest_2323at 2477.509 kb on - strand, within Psest_2323at 2477.622 kb on + strandat 2477.668 kb on + strandat 2477.668 kb on + strandat 2477.669 kb on - strandat 2477.669 kb on - strandat 2477.669 kb on - strandat 2477.669 kb on - strandat 2477.672 kb on - strandat 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2478.006 kb on + strand, within Psest_2324at 2478.006 kb on + strand, within Psest_2324at 2478.006 kb on + strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.220 kb on + strand, within Psest_2324at 2478.220 kb on + strand, within Psest_2324at 2478.305 kb on - strand, within Psest_2324at 2478.305 kb on - strand, within Psest_2324at 2478.577 kb on - strand, within Psest_2324at 2478.585 kb on + strand, within Psest_2324at 2478.615 kb on + strand, within Psest_2324at 2478.615 kb on + strand, within Psest_2324at 2478.646 kb on + strand, within Psest_2324at 2478.653 kb on - strand, within Psest_2324at 2478.801 kb on + strand, within Psest_2324at 2478.802 kb on - strand, within Psest_2324at 2478.802 kb on - strand, within Psest_2324at 2478.802 kb on - strand, within Psest_2324at 2478.896 kb on + strand, within Psest_2324at 2478.897 kb on - strand, within Psest_2324at 2479.080 kb on + strandat 2479.080 kb on + strandat 2479.080 kb on + strandat 2479.081 kb on - strandat 2479.081 kb on - strandat 2479.081 kb on - strandat 2479.081 kb on - strandat 2479.147 kb on - strandat 2479.281 kb on + strandat 2479.281 kb on + strandat 2479.281 kb on + strandat 2479.281 kb on + strandat 2479.282 kb on - strandat 2479.282 kb on - strandat 2479.282 kb on - strandat 2479.282 kb on - strandat 2479.282 kb on - strandat 2479.293 kb on + strandat 2479.294 kb on - strandat 2479.383 kb on + strand, within Psest_2325at 2479.383 kb on + strand, within Psest_2325at 2479.384 kb on - strand, within Psest_2325at 2479.384 kb on - strand, within Psest_2325at 2479.384 kb on - strand, within Psest_2325at 2479.521 kb on + strand, within Psest_2325at 2479.522 kb on - strand, within Psest_2325at 2479.597 kb on - strand, within Psest_2325at 2479.597 kb on - strand, within Psest_2325at 2479.674 kb on + strand, within Psest_2325at 2479.674 kb on + strand, within Psest_2325at 2479.675 kb on - strand, within Psest_2325at 2479.675 kb on - strand, within Psest_2325at 2479.675 kb on - strand, within Psest_2325at 2479.675 kb on - strand, within Psest_2325at 2479.675 kb on - strand, within Psest_2325at 2479.769 kb on + strand, within Psest_2325at 2479.938 kb on + strand, within Psest_2325at 2479.938 kb on + strand, within Psest_2325at 2479.939 kb on - strand, within Psest_2325at 2479.959 kb on + strand, within Psest_2325at 2479.959 kb on + strand, within Psest_2325at 2479.959 kb on + strand, within Psest_2325at 2479.960 kb on - strand, within Psest_2325

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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2,476,715 + Psest_2322 0.79 -0.5
2,476,715 + Psest_2322 0.79 +0.0
2,476,716 - Psest_2322 0.79 +3.6
2,476,716 - Psest_2322 0.79 +0.0
2,476,911 + -0.8
2,476,911 + -0.9
2,476,958 - +1.3
2,476,981 - +1.5
2,477,042 + -1.1
2,477,042 + +0.8
2,477,043 - +0.0
2,477,043 - -0.5
2,477,043 - +0.7
2,477,043 - +0.2
2,477,142 + Psest_2323 0.16 +0.9
2,477,142 + Psest_2323 0.16 +0.6
2,477,142 + Psest_2323 0.16 -1.0
2,477,143 - Psest_2323 0.17 +1.3
2,477,169 - Psest_2323 0.21 +0.7
2,477,169 - Psest_2323 0.21 +1.7
2,477,169 - Psest_2323 0.21 +0.4
2,477,212 + Psest_2323 0.27 +1.3
2,477,212 + Psest_2323 0.27 +0.3
2,477,212 + Psest_2323 0.27 +1.0
2,477,212 + Psest_2323 0.27 -0.3
2,477,212 + Psest_2323 0.27 +0.7
2,477,213 - Psest_2323 0.28 -0.7
2,477,213 - Psest_2323 0.28 +0.7
2,477,213 - Psest_2323 0.28 +0.3
2,477,213 - Psest_2323 0.28 +1.0
2,477,213 - Psest_2323 0.28 +0.0
2,477,298 + Psest_2323 0.41 +0.3
2,477,298 + Psest_2323 0.41 +0.5
2,477,298 + Psest_2323 0.41 -1.0
2,477,299 - Psest_2323 0.41 -0.2
2,477,299 - Psest_2323 0.41 +1.1
2,477,299 - Psest_2323 0.41 +1.2
2,477,299 - Psest_2323 0.41 +1.2
2,477,299 - Psest_2323 0.41 +0.9
2,477,299 - Psest_2323 0.41 +1.8
2,477,299 - Psest_2323 0.41 +1.5
2,477,299 - Psest_2323 0.41 +1.8
2,477,299 - Psest_2323 0.41 +0.7
2,477,299 - Psest_2323 0.41 +0.4
2,477,354 - Psest_2323 0.50 +0.1
2,477,354 - Psest_2323 0.50 +0.7
2,477,354 - Psest_2323 0.50 +0.7
2,477,354 - Psest_2323 0.50 +1.4
2,477,354 - Psest_2323 0.50 +0.5
2,477,354 - Psest_2323 0.50 +0.0
2,477,461 + Psest_2323 0.67 +0.5
2,477,461 + Psest_2323 0.67 +0.2
2,477,461 + Psest_2323 0.67 +1.4
2,477,461 + Psest_2323 0.67 -0.6
2,477,462 - Psest_2323 0.67 +0.8
2,477,462 - Psest_2323 0.67 +0.2
2,477,462 - Psest_2323 0.67 +1.5
2,477,508 + Psest_2323 0.74 -1.4
2,477,508 + Psest_2323 0.74 +0.1
2,477,509 - Psest_2323 0.74 +0.8
2,477,622 + +1.0
2,477,668 + +1.3
2,477,668 + -0.3
2,477,669 - -0.6
2,477,669 - +1.2
2,477,669 - +1.1
2,477,669 - -1.0
2,477,672 - +0.7
2,477,865 + Psest_2324 0.12 +1.1
2,477,865 + Psest_2324 0.12 +0.1
2,477,865 + Psest_2324 0.12 +0.0
2,477,865 + Psest_2324 0.12 +1.5
2,477,865 + Psest_2324 0.12 -0.7
2,477,865 + Psest_2324 0.12 +0.7
2,477,865 + Psest_2324 0.12 +1.7
2,477,865 + Psest_2324 0.12 +0.9
2,477,866 - Psest_2324 0.12 +0.3
2,477,866 - Psest_2324 0.12 -0.2
2,477,866 - Psest_2324 0.12 -0.4
2,477,866 - Psest_2324 0.12 +0.8
2,477,866 - Psest_2324 0.12 +1.9
2,477,866 - Psest_2324 0.12 +0.8
2,477,866 - Psest_2324 0.12 +1.5
2,477,866 - Psest_2324 0.12 +0.8
2,477,866 - Psest_2324 0.12 +0.9
2,477,866 - Psest_2324 0.12 -1.7
2,477,866 - Psest_2324 0.12 +1.2
2,477,866 - Psest_2324 0.12 +0.6
2,477,925 + Psest_2324 0.16 -0.9
2,477,925 + Psest_2324 0.16 -0.6
2,477,925 + Psest_2324 0.16 +1.4
2,477,925 + Psest_2324 0.16 -1.4
2,477,925 + Psest_2324 0.16 -1.0
2,477,925 + Psest_2324 0.16 +1.6
2,477,925 + Psest_2324 0.16 +0.8
2,477,925 + Psest_2324 0.16 +2.0
2,477,925 + Psest_2324 0.16 +1.9
2,477,925 + Psest_2324 0.16 +1.3
2,477,925 + Psest_2324 0.16 +0.5
2,477,925 + Psest_2324 0.16 +0.7
2,477,925 + Psest_2324 0.16 +1.0
2,477,926 - Psest_2324 0.16 +1.6
2,477,926 - Psest_2324 0.16 +1.2
2,477,926 - Psest_2324 0.16 +0.8
2,477,926 - Psest_2324 0.16 +1.1
2,477,926 - Psest_2324 0.16 +0.4
2,477,926 - Psest_2324 0.16 +0.3
2,477,926 - Psest_2324 0.16 +1.8
2,477,926 - Psest_2324 0.16 +0.7
2,477,926 - Psest_2324 0.16 +1.3
2,477,926 - Psest_2324 0.16 +1.7
2,478,006 + Psest_2324 0.22 -0.1
2,478,006 + Psest_2324 0.22 +0.4
2,478,006 + Psest_2324 0.22 -0.1
2,478,007 - Psest_2324 0.22 +1.0
2,478,007 - Psest_2324 0.22 +0.0
2,478,007 - Psest_2324 0.22 -1.2
2,478,007 - Psest_2324 0.22 -0.7
2,478,007 - Psest_2324 0.22 +2.5
2,478,007 - Psest_2324 0.22 -0.2
2,478,007 - Psest_2324 0.22 -0.0
2,478,220 + Psest_2324 0.36 +1.1
2,478,220 + Psest_2324 0.36 +1.7
2,478,305 - Psest_2324 0.41 +1.1
2,478,305 - Psest_2324 0.41 +0.9
2,478,577 - Psest_2324 0.59 +1.4
2,478,585 + Psest_2324 0.60 +0.9
2,478,615 + Psest_2324 0.61 +0.6
2,478,615 + Psest_2324 0.61 -0.2
2,478,646 + Psest_2324 0.64 +0.7
2,478,653 - Psest_2324 0.64 +0.7
2,478,801 + Psest_2324 0.74 +0.7
2,478,802 - Psest_2324 0.74 +1.5
2,478,802 - Psest_2324 0.74 -0.1
2,478,802 - Psest_2324 0.74 +1.4
2,478,896 + Psest_2324 0.80 +2.5
2,478,897 - Psest_2324 0.80 +1.9
2,479,080 + +0.1
2,479,080 + +0.8
2,479,080 + -2.2
2,479,081 - -0.5
2,479,081 - -2.1
2,479,081 - +2.8
2,479,081 - -1.6
2,479,147 - +1.6
2,479,281 + -0.9
2,479,281 + +1.1
2,479,281 + +0.6
2,479,281 + +0.9
2,479,282 - +0.2
2,479,282 - +1.5
2,479,282 - +1.4
2,479,282 - -1.2
2,479,282 - +1.0
2,479,293 + +1.6
2,479,294 - -0.3
2,479,383 + Psest_2325 0.18 +1.0
2,479,383 + Psest_2325 0.18 -0.3
2,479,384 - Psest_2325 0.18 +1.4
2,479,384 - Psest_2325 0.18 +1.4
2,479,384 - Psest_2325 0.18 +0.1
2,479,521 + Psest_2325 0.32 +1.1
2,479,522 - Psest_2325 0.32 -0.1
2,479,597 - Psest_2325 0.40 -0.0
2,479,597 - Psest_2325 0.40 +1.3
2,479,674 + Psest_2325 0.48 +1.5
2,479,674 + Psest_2325 0.48 +1.1
2,479,675 - Psest_2325 0.48 +1.7
2,479,675 - Psest_2325 0.48 +0.1
2,479,675 - Psest_2325 0.48 +1.9
2,479,675 - Psest_2325 0.48 +2.3
2,479,675 - Psest_2325 0.48 +0.2
2,479,769 + Psest_2325 0.57 +0.5
2,479,938 + Psest_2325 0.74 +1.7
2,479,938 + Psest_2325 0.74 +1.3
2,479,939 - Psest_2325 0.74 +0.9
2,479,959 + Psest_2325 0.77 +0.1
2,479,959 + Psest_2325 0.77 +1.7
2,479,959 + Psest_2325 0.77 -0.3
2,479,960 - Psest_2325 0.77 +1.2

Or see this region's nucleotide sequence