Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2293

Experiment: Dimethyl Sulfoxide 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2291 and Psest_2292 are separated by 46 nucleotidesPsest_2292 and Psest_2293 are separated by 9 nucleotidesPsest_2293 and Psest_2294 are separated by 43 nucleotides Psest_2291: Psest_2291 - Nitric oxide reductase large subunit, at 2,442,726 to 2,444,093 _2291 Psest_2292: Psest_2292 - Cytochrome c2, at 2,444,140 to 2,444,982 _2292 Psest_2293: Psest_2293 - hypothetical protein, at 2,444,992 to 2,445,117 _2293 Psest_2294: Psest_2294 - nitrite reductase, copper-containing, at 2,445,161 to 2,446,540 _2294 Position (kb) 2444 2445 2446Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2443.993 kb on + strandat 2443.993 kb on + strandat 2443.993 kb on + strandat 2443.993 kb on + strandat 2443.994 kb on - strandat 2443.994 kb on - strandat 2444.060 kb on - strandat 2444.096 kb on + strandat 2444.096 kb on + strandat 2444.096 kb on + strandat 2444.096 kb on + strandat 2444.096 kb on + strandat 2444.097 kb on - strandat 2444.097 kb on - strandat 2444.159 kb on + strandat 2444.240 kb on + strand, within Psest_2292at 2444.240 kb on + strand, within Psest_2292at 2444.240 kb on + strand, within Psest_2292at 2444.240 kb on + strand, within Psest_2292at 2444.240 kb on + strand, within Psest_2292at 2444.240 kb on + strand, within Psest_2292at 2444.240 kb on + strand, within Psest_2292at 2444.241 kb on - strand, within Psest_2292at 2444.294 kb on + strand, within Psest_2292at 2444.532 kb on + strand, within Psest_2292at 2444.693 kb on + strand, within Psest_2292at 2444.694 kb on - strand, within Psest_2292at 2444.694 kb on - strand, within Psest_2292at 2444.694 kb on - strand, within Psest_2292at 2444.716 kb on - strand, within Psest_2292at 2444.717 kb on + strand, within Psest_2292at 2444.717 kb on + strand, within Psest_2292at 2444.717 kb on + strand, within Psest_2292at 2444.717 kb on + strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.718 kb on - strand, within Psest_2292at 2444.774 kb on + strand, within Psest_2292at 2444.774 kb on + strand, within Psest_2292at 2444.775 kb on - strand, within Psest_2292at 2444.777 kb on + strand, within Psest_2292at 2444.778 kb on - strand, within Psest_2292at 2444.778 kb on - strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.819 kb on + strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.820 kb on - strand, within Psest_2292at 2444.823 kb on + strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2444.824 kb on - strand, within Psest_2292at 2445.038 kb on + strand, within Psest_2293at 2445.288 kb on + strandat 2445.288 kb on + strandat 2445.288 kb on + strandat 2445.288 kb on + strandat 2445.288 kb on + strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.289 kb on - strandat 2445.502 kb on + strand, within Psest_2294at 2445.503 kb on - strand, within Psest_2294at 2445.508 kb on + strand, within Psest_2294at 2445.526 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.542 kb on + strand, within Psest_2294at 2445.543 kb on - strand, within Psest_2294at 2445.543 kb on - strand, within Psest_2294at 2445.543 kb on - strand, within Psest_2294at 2445.621 kb on + strand, within Psest_2294at 2445.642 kb on + strand, within Psest_2294at 2445.642 kb on + strand, within Psest_2294at 2445.643 kb on - strand, within Psest_2294at 2445.643 kb on - strand, within Psest_2294at 2445.643 kb on - strand, within Psest_2294at 2445.699 kb on + strand, within Psest_2294at 2445.699 kb on + strand, within Psest_2294at 2445.699 kb on + strand, within Psest_2294at 2445.699 kb on + strand, within Psest_2294at 2445.699 kb on + strand, within Psest_2294at 2445.699 kb on + strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.700 kb on - strand, within Psest_2294at 2445.747 kb on + strand, within Psest_2294at 2445.748 kb on - strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.753 kb on + strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.754 kb on - strand, within Psest_2294at 2445.755 kb on + strand, within Psest_2294at 2445.755 kb on + strand, within Psest_2294at 2445.756 kb on - strand, within Psest_2294at 2445.950 kb on - strand, within Psest_2294at 2445.972 kb on + strand, within Psest_2294at 2445.972 kb on + strand, within Psest_2294at 2445.973 kb on - strand, within Psest_2294at 2445.973 kb on - strand, within Psest_2294

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
remove
2,443,993 + +0.1
2,443,993 + -1.3
2,443,993 + -0.6
2,443,993 + +0.5
2,443,994 - -0.0
2,443,994 - -0.0
2,444,060 - -0.1
2,444,096 + -0.4
2,444,096 + -0.5
2,444,096 + +0.8
2,444,096 + +0.1
2,444,096 + +1.6
2,444,097 - +0.8
2,444,097 - +0.8
2,444,159 + +0.2
2,444,240 + Psest_2292 0.12 +1.0
2,444,240 + Psest_2292 0.12 +0.3
2,444,240 + Psest_2292 0.12 +0.6
2,444,240 + Psest_2292 0.12 -0.8
2,444,240 + Psest_2292 0.12 +0.3
2,444,240 + Psest_2292 0.12 -0.5
2,444,240 + Psest_2292 0.12 +2.0
2,444,241 - Psest_2292 0.12 -0.8
2,444,294 + Psest_2292 0.18 -0.7
2,444,532 + Psest_2292 0.47 +0.2
2,444,693 + Psest_2292 0.66 +0.4
2,444,694 - Psest_2292 0.66 +1.2
2,444,694 - Psest_2292 0.66 +0.5
2,444,694 - Psest_2292 0.66 +0.1
2,444,716 - Psest_2292 0.68 -0.5
2,444,717 + Psest_2292 0.68 -0.2
2,444,717 + Psest_2292 0.68 +1.4
2,444,717 + Psest_2292 0.68 +0.9
2,444,717 + Psest_2292 0.68 +0.5
2,444,718 - Psest_2292 0.69 -1.5
2,444,718 - Psest_2292 0.69 -1.1
2,444,718 - Psest_2292 0.69 -0.6
2,444,718 - Psest_2292 0.69 -0.3
2,444,718 - Psest_2292 0.69 +0.0
2,444,718 - Psest_2292 0.69 +0.5
2,444,718 - Psest_2292 0.69 +0.9
2,444,718 - Psest_2292 0.69 +1.1
2,444,774 + Psest_2292 0.75 -1.9
2,444,774 + Psest_2292 0.75 +1.8
2,444,775 - Psest_2292 0.75 +1.8
2,444,777 + Psest_2292 0.76 -0.6
2,444,778 - Psest_2292 0.76 -0.3
2,444,778 - Psest_2292 0.76 -0.7
2,444,819 + Psest_2292 0.81 -1.0
2,444,819 + Psest_2292 0.81 -1.9
2,444,819 + Psest_2292 0.81 -0.7
2,444,819 + Psest_2292 0.81 +0.9
2,444,819 + Psest_2292 0.81 +0.3
2,444,819 + Psest_2292 0.81 -1.4
2,444,819 + Psest_2292 0.81 +2.1
2,444,819 + Psest_2292 0.81 +0.3
2,444,819 + Psest_2292 0.81 -0.7
2,444,819 + Psest_2292 0.81 -0.9
2,444,819 + Psest_2292 0.81 -3.0
2,444,819 + Psest_2292 0.81 -0.4
2,444,819 + Psest_2292 0.81 -0.6
2,444,819 + Psest_2292 0.81 +0.5
2,444,819 + Psest_2292 0.81 -0.5
2,444,820 - Psest_2292 0.81 +1.8
2,444,820 - Psest_2292 0.81 -1.0
2,444,820 - Psest_2292 0.81 -0.5
2,444,820 - Psest_2292 0.81 -0.7
2,444,820 - Psest_2292 0.81 +0.3
2,444,820 - Psest_2292 0.81 -0.9
2,444,820 - Psest_2292 0.81 -0.3
2,444,823 + Psest_2292 0.81 +0.9
2,444,824 - Psest_2292 0.81 -2.3
2,444,824 - Psest_2292 0.81 +0.5
2,444,824 - Psest_2292 0.81 -1.3
2,444,824 - Psest_2292 0.81 +1.3
2,444,824 - Psest_2292 0.81 -1.5
2,444,824 - Psest_2292 0.81 +0.4
2,444,824 - Psest_2292 0.81 -0.1
2,444,824 - Psest_2292 0.81 +0.4
2,445,038 + Psest_2293 0.37 +0.7
2,445,288 + -1.1
2,445,288 + -0.5
2,445,288 + -1.1
2,445,288 + +1.0
2,445,288 + -0.8
2,445,289 - +0.2
2,445,289 - -2.5
2,445,289 - -0.5
2,445,289 - -0.8
2,445,289 - -1.5
2,445,289 - -0.9
2,445,289 - +0.7
2,445,289 - +0.1
2,445,289 - -1.0
2,445,289 - -1.1
2,445,289 - +0.3
2,445,289 - -0.2
2,445,502 + Psest_2294 0.25 -0.2
2,445,503 - Psest_2294 0.25 -0.0
2,445,508 + Psest_2294 0.25 -0.2
2,445,526 + Psest_2294 0.26 -2.5
2,445,542 + Psest_2294 0.28 +2.2
2,445,542 + Psest_2294 0.28 -1.5
2,445,542 + Psest_2294 0.28 +0.6
2,445,542 + Psest_2294 0.28 -1.0
2,445,542 + Psest_2294 0.28 +0.9
2,445,542 + Psest_2294 0.28 -0.2
2,445,542 + Psest_2294 0.28 -0.2
2,445,542 + Psest_2294 0.28 -0.8
2,445,542 + Psest_2294 0.28 +0.1
2,445,543 - Psest_2294 0.28 -1.3
2,445,543 - Psest_2294 0.28 +0.6
2,445,543 - Psest_2294 0.28 +1.3
2,445,621 + Psest_2294 0.33 +0.5
2,445,642 + Psest_2294 0.35 -1.2
2,445,642 + Psest_2294 0.35 -1.4
2,445,643 - Psest_2294 0.35 +1.0
2,445,643 - Psest_2294 0.35 -1.5
2,445,643 - Psest_2294 0.35 -1.5
2,445,699 + Psest_2294 0.39 -0.3
2,445,699 + Psest_2294 0.39 +0.5
2,445,699 + Psest_2294 0.39 -0.0
2,445,699 + Psest_2294 0.39 +0.9
2,445,699 + Psest_2294 0.39 -0.8
2,445,699 + Psest_2294 0.39 -0.2
2,445,700 - Psest_2294 0.39 +0.8
2,445,700 - Psest_2294 0.39 +0.6
2,445,700 - Psest_2294 0.39 -1.6
2,445,700 - Psest_2294 0.39 -0.9
2,445,700 - Psest_2294 0.39 +0.9
2,445,700 - Psest_2294 0.39 +1.1
2,445,700 - Psest_2294 0.39 -2.7
2,445,700 - Psest_2294 0.39 -0.2
2,445,700 - Psest_2294 0.39 +0.3
2,445,700 - Psest_2294 0.39 -0.4
2,445,700 - Psest_2294 0.39 +0.0
2,445,700 - Psest_2294 0.39 -1.4
2,445,747 + Psest_2294 0.42 -1.6
2,445,748 - Psest_2294 0.43 +2.5
2,445,753 + Psest_2294 0.43 +1.8
2,445,753 + Psest_2294 0.43 +0.1
2,445,753 + Psest_2294 0.43 -1.6
2,445,753 + Psest_2294 0.43 +1.4
2,445,753 + Psest_2294 0.43 +2.2
2,445,753 + Psest_2294 0.43 +1.4
2,445,753 + Psest_2294 0.43 -1.2
2,445,753 + Psest_2294 0.43 +0.7
2,445,753 + Psest_2294 0.43 -0.9
2,445,753 + Psest_2294 0.43 -0.9
2,445,753 + Psest_2294 0.43 -0.5
2,445,753 + Psest_2294 0.43 +1.1
2,445,754 - Psest_2294 0.43 +0.1
2,445,754 - Psest_2294 0.43 +2.1
2,445,754 - Psest_2294 0.43 +0.4
2,445,754 - Psest_2294 0.43 -0.4
2,445,754 - Psest_2294 0.43 +0.6
2,445,754 - Psest_2294 0.43 -1.9
2,445,754 - Psest_2294 0.43 -1.2
2,445,754 - Psest_2294 0.43 -0.8
2,445,754 - Psest_2294 0.43 -1.6
2,445,754 - Psest_2294 0.43 +0.1
2,445,755 + Psest_2294 0.43 -1.2
2,445,755 + Psest_2294 0.43 -0.2
2,445,756 - Psest_2294 0.43 -3.2
2,445,950 - Psest_2294 0.57 +0.4
2,445,972 + Psest_2294 0.59 +1.5
2,445,972 + Psest_2294 0.59 +1.1
2,445,973 - Psest_2294 0.59 -0.3
2,445,973 - Psest_2294 0.59 -0.8

Or see this region's nucleotide sequence