Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2272

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2270 and Psest_2271 overlap by 29 nucleotidesPsest_2271 and Psest_2272 are separated by 93 nucleotidesPsest_2272 and Psest_2273 are separated by 86 nucleotides Psest_2270: Psest_2270 - coenzyme PQQ biosynthesis protein E, at 2,420,309 to 2,421,463 _2270 Psest_2271: Psest_2271 - coenzyme PQQ biosynthesis protein PqqD, at 2,421,435 to 2,421,713 _2271 Psest_2272: Psest_2272 - coenzyme PQQ biosynthesis protein C, at 2,421,807 to 2,422,559 _2272 Psest_2273: Psest_2273 - coenzyme PQQ biosynthesis protein B, at 2,422,646 to 2,423,557 _2273 Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -2 -1 0 1 2at 2420.819 kb on + strand, within Psest_2270at 2420.819 kb on + strand, within Psest_2270at 2420.820 kb on - strand, within Psest_2270at 2420.874 kb on + strand, within Psest_2270at 2420.887 kb on + strand, within Psest_2270at 2421.104 kb on - strand, within Psest_2270at 2421.180 kb on + strand, within Psest_2270at 2421.180 kb on + strand, within Psest_2270at 2421.180 kb on + strand, within Psest_2270at 2421.181 kb on - strand, within Psest_2270at 2421.215 kb on + strand, within Psest_2270at 2421.215 kb on + strand, within Psest_2270at 2421.294 kb on - strand, within Psest_2270at 2421.384 kb on + strandat 2421.384 kb on + strandat 2421.385 kb on - strandat 2421.385 kb on - strandat 2421.385 kb on - strandat 2421.630 kb on + strand, within Psest_2271at 2421.631 kb on - strand, within Psest_2271at 2421.631 kb on - strand, within Psest_2271at 2421.631 kb on - strand, within Psest_2271at 2421.631 kb on - strand, within Psest_2271at 2421.631 kb on - strand, within Psest_2271at 2421.731 kb on + strandat 2421.731 kb on + strandat 2421.809 kb on - strandat 2421.857 kb on - strandat 2421.877 kb on + strandat 2421.877 kb on + strandat 2421.877 kb on + strandat 2421.944 kb on + strand, within Psest_2272at 2421.944 kb on + strand, within Psest_2272at 2421.944 kb on + strand, within Psest_2272at 2421.944 kb on + strand, within Psest_2272at 2421.944 kb on + strand, within Psest_2272at 2421.944 kb on + strand, within Psest_2272at 2421.945 kb on - strand, within Psest_2272at 2421.945 kb on - strand, within Psest_2272at 2421.945 kb on - strand, within Psest_2272at 2422.039 kb on + strand, within Psest_2272at 2422.086 kb on - strand, within Psest_2272at 2422.180 kb on + strand, within Psest_2272at 2422.180 kb on + strand, within Psest_2272at 2422.181 kb on - strand, within Psest_2272at 2422.181 kb on - strand, within Psest_2272at 2422.181 kb on - strand, within Psest_2272at 2422.181 kb on - strand, within Psest_2272at 2422.395 kb on - strand, within Psest_2272at 2422.409 kb on - strand, within Psest_2272at 2422.409 kb on - strand, within Psest_2272at 2422.409 kb on - strand, within Psest_2272at 2422.462 kb on + strand, within Psest_2272at 2422.462 kb on + strand, within Psest_2272at 2422.462 kb on + strand, within Psest_2272at 2422.462 kb on + strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.495 kb on + strandat 2422.495 kb on + strandat 2422.496 kb on - strandat 2422.498 kb on + strandat 2422.498 kb on + strandat 2422.498 kb on + strandat 2422.498 kb on + strandat 2422.499 kb on - strandat 2422.908 kb on - strand, within Psest_2273at 2422.971 kb on + strand, within Psest_2273at 2422.971 kb on + strand, within Psest_2273at 2422.972 kb on - strand, within Psest_2273at 2422.993 kb on + strand, within Psest_2273at 2422.993 kb on + strand, within Psest_2273at 2422.993 kb on + strand, within Psest_2273at 2422.994 kb on - strand, within Psest_2273at 2423.072 kb on - strand, within Psest_2273at 2423.072 kb on - strand, within Psest_2273at 2423.092 kb on + strand, within Psest_2273at 2423.285 kb on + strand, within Psest_2273at 2423.285 kb on + strand, within Psest_2273at 2423.285 kb on + strand, within Psest_2273at 2423.286 kb on - strand, within Psest_2273at 2423.286 kb on - strand, within Psest_2273at 2423.540 kb on + strandat 2423.540 kb on + strandat 2423.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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2,420,819 + Psest_2270 0.44 -0.9
2,420,819 + Psest_2270 0.44 +1.2
2,420,820 - Psest_2270 0.44 +0.4
2,420,874 + Psest_2270 0.49 -0.2
2,420,887 + Psest_2270 0.50 -0.4
2,421,104 - Psest_2270 0.69 -1.6
2,421,180 + Psest_2270 0.75 -2.0
2,421,180 + Psest_2270 0.75 -0.2
2,421,180 + Psest_2270 0.75 -0.1
2,421,181 - Psest_2270 0.75 -0.4
2,421,215 + Psest_2270 0.78 +0.2
2,421,215 + Psest_2270 0.78 +0.0
2,421,294 - Psest_2270 0.85 +0.2
2,421,384 + +0.2
2,421,384 + +0.8
2,421,385 - -0.3
2,421,385 - +0.4
2,421,385 - -0.1
2,421,630 + Psest_2271 0.70 -0.4
2,421,631 - Psest_2271 0.70 -1.2
2,421,631 - Psest_2271 0.70 -0.3
2,421,631 - Psest_2271 0.70 +0.5
2,421,631 - Psest_2271 0.70 -1.6
2,421,631 - Psest_2271 0.70 +0.1
2,421,731 + -0.6
2,421,731 + -0.5
2,421,809 - -1.1
2,421,857 - +1.1
2,421,877 + +0.2
2,421,877 + -0.4
2,421,877 + +2.1
2,421,944 + Psest_2272 0.18 +1.3
2,421,944 + Psest_2272 0.18 +0.6
2,421,944 + Psest_2272 0.18 -1.4
2,421,944 + Psest_2272 0.18 -1.1
2,421,944 + Psest_2272 0.18 -0.4
2,421,944 + Psest_2272 0.18 -1.5
2,421,945 - Psest_2272 0.18 +0.5
2,421,945 - Psest_2272 0.18 -0.5
2,421,945 - Psest_2272 0.18 +0.7
2,422,039 + Psest_2272 0.31 -0.4
2,422,086 - Psest_2272 0.37 +0.1
2,422,180 + Psest_2272 0.50 -1.1
2,422,180 + Psest_2272 0.50 +0.2
2,422,181 - Psest_2272 0.50 -1.0
2,422,181 - Psest_2272 0.50 -0.2
2,422,181 - Psest_2272 0.50 -0.2
2,422,181 - Psest_2272 0.50 +0.8
2,422,395 - Psest_2272 0.78 -0.7
2,422,409 - Psest_2272 0.80 -1.1
2,422,409 - Psest_2272 0.80 -0.1
2,422,409 - Psest_2272 0.80 +0.7
2,422,462 + Psest_2272 0.87 -1.4
2,422,462 + Psest_2272 0.87 +0.3
2,422,462 + Psest_2272 0.87 +0.7
2,422,462 + Psest_2272 0.87 -2.0
2,422,463 - Psest_2272 0.87 -1.9
2,422,463 - Psest_2272 0.87 -1.2
2,422,463 - Psest_2272 0.87 -0.2
2,422,463 - Psest_2272 0.87 +0.7
2,422,463 - Psest_2272 0.87 -1.2
2,422,463 - Psest_2272 0.87 -1.8
2,422,463 - Psest_2272 0.87 -0.6
2,422,463 - Psest_2272 0.87 -0.3
2,422,463 - Psest_2272 0.87 +0.3
2,422,463 - Psest_2272 0.87 +0.7
2,422,495 + +0.8
2,422,495 + -0.4
2,422,496 - -0.7
2,422,498 + -0.7
2,422,498 + -1.4
2,422,498 + -0.1
2,422,498 + +0.2
2,422,499 - -0.1
2,422,908 - Psest_2273 0.29 -0.4
2,422,971 + Psest_2273 0.36 -2.5
2,422,971 + Psest_2273 0.36 -0.1
2,422,972 - Psest_2273 0.36 -0.2
2,422,993 + Psest_2273 0.38 +1.0
2,422,993 + Psest_2273 0.38 +0.1
2,422,993 + Psest_2273 0.38 -1.6
2,422,994 - Psest_2273 0.38 +0.7
2,423,072 - Psest_2273 0.47 -0.8
2,423,072 - Psest_2273 0.47 +0.2
2,423,092 + Psest_2273 0.49 +1.9
2,423,285 + Psest_2273 0.70 -0.5
2,423,285 + Psest_2273 0.70 +1.4
2,423,285 + Psest_2273 0.70 -0.1
2,423,286 - Psest_2273 0.70 +1.1
2,423,286 - Psest_2273 0.70 +1.7
2,423,540 + +0.1
2,423,540 + -0.8
2,423,540 + +0.3

Or see this region's nucleotide sequence