Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2066

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2065 and Psest_2066 are separated by 1 nucleotidesPsest_2066 and Psest_2067 are separated by 2 nucleotides Psest_2065: Psest_2065 - ABC-type uncharacterized transport system, permease component, at 2,191,247 to 2,192,266 _2065 Psest_2066: Psest_2066 - ABC-type uncharacterized transport system, permease component, at 2,192,268 to 2,193,341 _2066 Psest_2067: Psest_2067 - ABC-type oligopeptide transport system, periplasmic component, at 2,193,344 to 2,195,230 _2067 Position (kb) 2192 2193 2194Strain fitness (log2 ratio) -2 -1 0 1at 2191.566 kb on + strand, within Psest_2065at 2191.695 kb on - strand, within Psest_2065at 2191.699 kb on - strand, within Psest_2065at 2192.926 kb on + strand, within Psest_2066at 2193.536 kb on - strand, within Psest_2067at 2194.305 kb on + strand, within Psest_2067

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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2,191,566 + Psest_2065 0.31 -2.1
2,191,695 - Psest_2065 0.44 -1.2
2,191,699 - Psest_2065 0.44 -1.7
2,192,926 + Psest_2066 0.61 +1.3
2,193,536 - Psest_2067 0.10 +0.4
2,194,305 + Psest_2067 0.51 +1.1

Or see this region's nucleotide sequence