Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1882 and Psest_1883 are separated by 91 nucleotides Psest_1883 and Psest_1884 are separated by 142 nucleotides Psest_1884 and Psest_1885 are separated by 14 nucleotides Psest_1885 and Psest_1886 are separated by 75 nucleotides
Psest_1882: Psest_1882 - Signal transduction histidine kinase, at 1,992,338 to 1,993,684
_1882
Psest_1883: Psest_1883 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 1,993,776 to 1,994,189
_1883
Psest_1884: Psest_1884 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,994,332 to 1,995,009
_1884
Psest_1885: Psest_1885 - hypothetical protein, at 1,995,024 to 1,995,401
_1885
Psest_1886: Psest_1886 - Uncharacterized protein conserved in bacteria, at 1,995,477 to 1,995,776
_1886
Position (kb) 1994
1995
1996 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1993.448 kb on + strand, within Psest_1882 at 1993.448 kb on + strand, within Psest_1882 at 1993.448 kb on + strand, within Psest_1882 at 1993.525 kb on - strand, within Psest_1882 at 1993.525 kb on - strand, within Psest_1882 at 1993.982 kb on - strand, within Psest_1883 at 1994.173 kb on - strand at 1994.195 kb on + strand at 1994.196 kb on - strand at 1994.196 kb on - strand at 1994.277 kb on + strand at 1994.278 kb on - strand at 1994.278 kb on - strand at 1994.342 kb on + strand at 1994.343 kb on - strand at 1994.348 kb on + strand at 1994.349 kb on - strand at 1994.682 kb on + strand, within Psest_1884 at 1994.683 kb on - strand, within Psest_1884 at 1994.714 kb on + strand, within Psest_1884 at 1994.715 kb on - strand, within Psest_1884 at 1994.998 kb on + strand at 1994.998 kb on + strand at 1994.998 kb on + strand at 1994.998 kb on + strand at 1994.998 kb on + strand at 1994.998 kb on + strand at 1994.999 kb on - strand at 1995.078 kb on - strand, within Psest_1885 at 1995.210 kb on + strand, within Psest_1885 at 1995.316 kb on + strand, within Psest_1885 at 1995.317 kb on - strand, within Psest_1885 at 1995.317 kb on - strand, within Psest_1885 at 1995.346 kb on - strand, within Psest_1885 at 1995.346 kb on - strand, within Psest_1885 at 1995.412 kb on - strand at 1995.420 kb on - strand at 1995.459 kb on - strand at 1995.510 kb on + strand, within Psest_1886 at 1995.511 kb on - strand, within Psest_1886 at 1995.534 kb on + strand, within Psest_1886 at 1995.535 kb on - strand, within Psest_1886 at 1995.536 kb on + strand, within Psest_1886 at 1995.537 kb on - strand, within Psest_1886 at 1995.537 kb on - strand, within Psest_1886 at 1995.537 kb on - strand, within Psest_1886 at 1995.537 kb on - strand, within Psest_1886 at 1995.538 kb on + strand, within Psest_1886 at 1995.538 kb on + strand, within Psest_1886 at 1995.538 kb on + strand, within Psest_1886 at 1995.539 kb on - strand, within Psest_1886 at 1995.539 kb on - strand, within Psest_1886 at 1995.539 kb on - strand, within Psest_1886 at 1995.769 kb on + strand at 1995.809 kb on - strand at 1995.824 kb on - strand at 1995.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 1,993,448 + Psest_1882 0.82 +0.3 1,993,448 + Psest_1882 0.82 -0.3 1,993,448 + Psest_1882 0.82 +0.4 1,993,525 - Psest_1882 0.88 -0.5 1,993,525 - Psest_1882 0.88 +0.9 1,993,982 - Psest_1883 0.50 -0.9 1,994,173 - -0.7 1,994,195 + +1.0 1,994,196 - +1.1 1,994,196 - +0.5 1,994,277 + -0.3 1,994,278 - +0.7 1,994,278 - +1.1 1,994,342 + +0.7 1,994,343 - +1.4 1,994,348 + -2.7 1,994,349 - -0.9 1,994,682 + Psest_1884 0.52 +0.7 1,994,683 - Psest_1884 0.52 +0.3 1,994,714 + Psest_1884 0.56 +0.5 1,994,715 - Psest_1884 0.56 +2.5 1,994,998 + -3.6 1,994,998 + -1.2 1,994,998 + +0.4 1,994,998 + -0.1 1,994,998 + -0.5 1,994,998 + +0.9 1,994,999 - -0.1 1,995,078 - Psest_1885 0.14 -0.0 1,995,210 + Psest_1885 0.49 -0.7 1,995,316 + Psest_1885 0.77 +0.6 1,995,317 - Psest_1885 0.78 +0.1 1,995,317 - Psest_1885 0.78 +1.8 1,995,346 - Psest_1885 0.85 -0.1 1,995,346 - Psest_1885 0.85 +0.4 1,995,412 - +0.6 1,995,420 - -0.3 1,995,459 - +0.1 1,995,510 + Psest_1886 0.11 +0.6 1,995,511 - Psest_1886 0.11 +1.7 1,995,534 + Psest_1886 0.19 +1.1 1,995,535 - Psest_1886 0.19 -0.7 1,995,536 + Psest_1886 0.20 -1.5 1,995,537 - Psest_1886 0.20 -1.5 1,995,537 - Psest_1886 0.20 -0.0 1,995,537 - Psest_1886 0.20 -0.3 1,995,537 - Psest_1886 0.20 -1.9 1,995,538 + Psest_1886 0.20 -0.2 1,995,538 + Psest_1886 0.20 -1.9 1,995,538 + Psest_1886 0.20 +1.3 1,995,539 - Psest_1886 0.21 +1.2 1,995,539 - Psest_1886 0.21 -0.5 1,995,539 - Psest_1886 0.21 +0.0 1,995,769 + -2.4 1,995,809 - -1.1 1,995,824 - +0.0 1,995,909 - +0.8
Or see this region's nucleotide sequence