Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0431

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0429 and Psest_0430 are separated by 8 nucleotidesPsest_0430 and Psest_0431 are separated by 8 nucleotidesPsest_0431 and Psest_0432 overlap by 7 nucleotides Psest_0429: Psest_0429 - phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein, at 467,122 to 467,985 _0429 Psest_0430: Psest_0430 - phosphonate ABC transporter, permease protein PhnE, at 467,994 to 468,821 _0430 Psest_0431: Psest_0431 - Lactate dehydrogenase and related dehydrogenases, at 468,830 to 469,840 _0431 Psest_0432: Psest_0432 - Transcriptional regulator, at 469,834 to 470,703 _0432 Position (kb) 468 469 470Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 467.852 kb on + strand, within Psest_0429at 467.852 kb on + strand, within Psest_0429at 467.852 kb on + strand, within Psest_0429at 467.852 kb on + strand, within Psest_0429at 467.852 kb on + strand, within Psest_0429at 467.852 kb on + strand, within Psest_0429at 467.853 kb on - strand, within Psest_0429at 467.853 kb on - strand, within Psest_0429at 467.853 kb on - strand, within Psest_0429at 467.853 kb on - strand, within Psest_0429at 467.853 kb on - strand, within Psest_0429at 467.853 kb on - strand, within Psest_0429at 467.993 kb on + strandat 468.007 kb on - strandat 468.100 kb on + strand, within Psest_0430at 468.100 kb on + strand, within Psest_0430at 468.101 kb on - strand, within Psest_0430at 468.101 kb on - strand, within Psest_0430at 468.101 kb on - strand, within Psest_0430at 468.129 kb on + strand, within Psest_0430at 468.130 kb on - strand, within Psest_0430at 468.130 kb on - strand, within Psest_0430at 468.630 kb on + strand, within Psest_0430at 468.642 kb on + strand, within Psest_0430at 468.642 kb on + strand, within Psest_0430at 468.643 kb on - strand, within Psest_0430at 468.729 kb on + strand, within Psest_0430at 468.730 kb on - strand, within Psest_0430at 468.779 kb on - strandat 468.779 kb on - strandat 468.781 kb on + strandat 468.781 kb on + strandat 468.782 kb on - strandat 468.782 kb on - strandat 468.782 kb on - strandat 468.819 kb on + strandat 468.847 kb on + strandat 468.848 kb on - strandat 468.849 kb on + strandat 468.849 kb on + strandat 468.849 kb on + strandat 468.849 kb on + strandat 468.849 kb on + strandat 468.849 kb on + strandat 468.850 kb on - strandat 468.850 kb on - strandat 468.850 kb on - strandat 468.850 kb on - strandat 468.850 kb on - strandat 468.861 kb on + strandat 468.862 kb on - strandat 469.038 kb on + strand, within Psest_0431at 469.245 kb on - strand, within Psest_0431at 469.267 kb on + strand, within Psest_0431at 469.267 kb on + strand, within Psest_0431at 469.506 kb on + strand, within Psest_0431at 469.527 kb on + strand, within Psest_0431at 469.527 kb on + strand, within Psest_0431at 469.527 kb on + strand, within Psest_0431at 469.527 kb on + strand, within Psest_0431at 469.527 kb on + strand, within Psest_0431at 469.528 kb on - strand, within Psest_0431at 469.528 kb on - strand, within Psest_0431at 469.528 kb on - strand, within Psest_0431at 469.528 kb on - strand, within Psest_0431at 469.528 kb on - strand, within Psest_0431at 469.528 kb on - strand, within Psest_0431at 469.548 kb on + strand, within Psest_0431at 469.602 kb on - strand, within Psest_0431at 469.614 kb on + strand, within Psest_0431at 469.614 kb on + strand, within Psest_0431at 469.615 kb on - strand, within Psest_0431at 469.615 kb on - strand, within Psest_0431at 469.615 kb on - strand, within Psest_0431at 469.615 kb on - strand, within Psest_0431at 469.687 kb on + strand, within Psest_0431at 469.688 kb on - strand, within Psest_0431at 469.688 kb on - strand, within Psest_0431at 469.707 kb on + strand, within Psest_0431at 469.707 kb on + strand, within Psest_0431at 469.707 kb on + strand, within Psest_0431at 469.707 kb on + strand, within Psest_0431at 469.707 kb on + strand, within Psest_0431at 469.707 kb on + strand, within Psest_0431at 469.707 kb on + strand, within Psest_0431at 469.707 kb on + strand, within Psest_0431at 469.708 kb on - strand, within Psest_0431at 469.708 kb on - strand, within Psest_0431at 469.708 kb on - strand, within Psest_0431at 469.708 kb on - strand, within Psest_0431at 469.708 kb on - strand, within Psest_0431at 469.708 kb on - strand, within Psest_0431at 469.708 kb on - strand, within Psest_0431at 469.708 kb on - strand, within Psest_0431at 469.866 kb on - strandat 470.008 kb on - strand, within Psest_0432at 470.072 kb on + strand, within Psest_0432at 470.128 kb on + strand, within Psest_0432at 470.128 kb on + strand, within Psest_0432at 470.128 kb on + strand, within Psest_0432at 470.128 kb on + strand, within Psest_0432at 470.128 kb on + strand, within Psest_0432at 470.129 kb on - strand, within Psest_0432at 470.129 kb on - strand, within Psest_0432at 470.129 kb on - strand, within Psest_0432at 470.129 kb on - strand, within Psest_0432at 470.129 kb on - strand, within Psest_0432at 470.129 kb on - strand, within Psest_0432at 470.129 kb on - strand, within Psest_0432at 470.129 kb on - strand, within Psest_0432at 470.129 kb on - strand, within Psest_0432at 470.155 kb on + strand, within Psest_0432at 470.155 kb on + strand, within Psest_0432at 470.155 kb on + strand, within Psest_0432at 470.155 kb on + strand, within Psest_0432at 470.155 kb on + strand, within Psest_0432at 470.155 kb on + strand, within Psest_0432at 470.156 kb on - strand, within Psest_0432at 470.156 kb on - strand, within Psest_0432at 470.156 kb on - strand, within Psest_0432at 470.156 kb on - strand, within Psest_0432at 470.156 kb on - strand, within Psest_0432at 470.156 kb on - strand, within Psest_0432at 470.229 kb on - strand, within Psest_0432at 470.229 kb on - strand, within Psest_0432at 470.229 kb on - strand, within Psest_0432at 470.271 kb on - strand, within Psest_0432at 470.363 kb on + strand, within Psest_0432at 470.363 kb on + strand, within Psest_0432at 470.363 kb on + strand, within Psest_0432at 470.363 kb on + strand, within Psest_0432at 470.363 kb on + strand, within Psest_0432at 470.363 kb on + strand, within Psest_0432at 470.363 kb on + strand, within Psest_0432at 470.363 kb on + strand, within Psest_0432at 470.363 kb on + strand, within Psest_0432at 470.364 kb on - strand, within Psest_0432at 470.364 kb on - strand, within Psest_0432at 470.364 kb on - strand, within Psest_0432at 470.364 kb on - strand, within Psest_0432at 470.364 kb on - strand, within Psest_0432at 470.440 kb on + strand, within Psest_0432at 470.440 kb on + strand, within Psest_0432at 470.440 kb on + strand, within Psest_0432at 470.441 kb on - strand, within Psest_0432at 470.441 kb on - strand, within Psest_0432at 470.552 kb on + strand, within Psest_0432at 470.552 kb on + strand, within Psest_0432at 470.552 kb on + strand, within Psest_0432at 470.553 kb on - strand, within Psest_0432at 470.583 kb on - strand, within Psest_0432at 470.675 kb on + strandat 470.675 kb on + strandat 470.675 kb on + strandat 470.675 kb on + strandat 470.676 kb on - strandat 470.676 kb on - strandat 470.693 kb on + strandat 470.693 kb on + strandat 470.693 kb on + strandat 470.693 kb on + strandat 470.693 kb on + strandat 470.693 kb on + strandat 470.694 kb on - strandat 470.694 kb on - strandat 470.694 kb on - strandat 470.694 kb on - strandat 470.782 kb on + strandat 470.783 kb on - strandat 470.783 kb on - strandat 470.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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467,852 + Psest_0429 0.84 +2.2
467,852 + Psest_0429 0.84 -0.1
467,852 + Psest_0429 0.84 +0.5
467,852 + Psest_0429 0.84 -1.0
467,852 + Psest_0429 0.84 +0.1
467,852 + Psest_0429 0.84 +0.3
467,853 - Psest_0429 0.85 -1.8
467,853 - Psest_0429 0.85 +0.9
467,853 - Psest_0429 0.85 +0.2
467,853 - Psest_0429 0.85 -0.2
467,853 - Psest_0429 0.85 +0.3
467,853 - Psest_0429 0.85 -0.1
467,993 + -0.4
468,007 - +1.8
468,100 + Psest_0430 0.13 +1.2
468,100 + Psest_0430 0.13 +0.3
468,101 - Psest_0430 0.13 -0.8
468,101 - Psest_0430 0.13 +0.9
468,101 - Psest_0430 0.13 +0.0
468,129 + Psest_0430 0.16 -0.5
468,130 - Psest_0430 0.16 +0.1
468,130 - Psest_0430 0.16 -0.8
468,630 + Psest_0430 0.77 +0.0
468,642 + Psest_0430 0.78 +0.1
468,642 + Psest_0430 0.78 -0.1
468,643 - Psest_0430 0.78 +0.5
468,729 + Psest_0430 0.89 -0.6
468,730 - Psest_0430 0.89 +0.3
468,779 - -1.8
468,779 - +0.4
468,781 + +0.5
468,781 + +0.5
468,782 - +0.8
468,782 - +1.3
468,782 - +0.4
468,819 + -0.3
468,847 + -0.3
468,848 - -0.8
468,849 + +0.6
468,849 + -1.2
468,849 + -1.3
468,849 + -0.6
468,849 + -0.8
468,849 + +0.4
468,850 - -1.2
468,850 - -1.0
468,850 - +0.1
468,850 - +0.1
468,850 - +0.3
468,861 + -0.6
468,862 - +0.2
469,038 + Psest_0431 0.21 -0.6
469,245 - Psest_0431 0.41 +2.8
469,267 + Psest_0431 0.43 -0.7
469,267 + Psest_0431 0.43 +3.5
469,506 + Psest_0431 0.67 -1.7
469,527 + Psest_0431 0.69 -1.5
469,527 + Psest_0431 0.69 +1.4
469,527 + Psest_0431 0.69 +0.3
469,527 + Psest_0431 0.69 +0.1
469,527 + Psest_0431 0.69 +2.4
469,528 - Psest_0431 0.69 +0.1
469,528 - Psest_0431 0.69 +0.5
469,528 - Psest_0431 0.69 -2.2
469,528 - Psest_0431 0.69 -1.8
469,528 - Psest_0431 0.69 +2.1
469,528 - Psest_0431 0.69 +0.1
469,548 + Psest_0431 0.71 +1.5
469,602 - Psest_0431 0.76 +2.7
469,614 + Psest_0431 0.78 -2.5
469,614 + Psest_0431 0.78 -0.6
469,615 - Psest_0431 0.78 +1.2
469,615 - Psest_0431 0.78 -1.0
469,615 - Psest_0431 0.78 +1.8
469,615 - Psest_0431 0.78 +0.6
469,687 + Psest_0431 0.85 +0.7
469,688 - Psest_0431 0.85 -0.2
469,688 - Psest_0431 0.85 +0.2
469,707 + Psest_0431 0.87 -4.1
469,707 + Psest_0431 0.87 -0.7
469,707 + Psest_0431 0.87 +1.3
469,707 + Psest_0431 0.87 -1.3
469,707 + Psest_0431 0.87 +1.5
469,707 + Psest_0431 0.87 -2.8
469,707 + Psest_0431 0.87 -1.1
469,707 + Psest_0431 0.87 +0.4
469,708 - Psest_0431 0.87 +1.4
469,708 - Psest_0431 0.87 -2.0
469,708 - Psest_0431 0.87 +1.7
469,708 - Psest_0431 0.87 +0.2
469,708 - Psest_0431 0.87 +0.5
469,708 - Psest_0431 0.87 +2.2
469,708 - Psest_0431 0.87 -1.0
469,708 - Psest_0431 0.87 -1.1
469,866 - +0.2
470,008 - Psest_0432 0.20 +1.1
470,072 + Psest_0432 0.27 +1.4
470,128 + Psest_0432 0.34 -0.3
470,128 + Psest_0432 0.34 -0.4
470,128 + Psest_0432 0.34 -0.0
470,128 + Psest_0432 0.34 -0.3
470,128 + Psest_0432 0.34 -0.2
470,129 - Psest_0432 0.34 +0.7
470,129 - Psest_0432 0.34 -1.0
470,129 - Psest_0432 0.34 -1.2
470,129 - Psest_0432 0.34 -0.2
470,129 - Psest_0432 0.34 +0.8
470,129 - Psest_0432 0.34 +0.9
470,129 - Psest_0432 0.34 +0.3
470,129 - Psest_0432 0.34 -0.9
470,129 - Psest_0432 0.34 -0.1
470,155 + Psest_0432 0.37 +1.0
470,155 + Psest_0432 0.37 -2.0
470,155 + Psest_0432 0.37 -0.3
470,155 + Psest_0432 0.37 +1.3
470,155 + Psest_0432 0.37 +0.8
470,155 + Psest_0432 0.37 +1.1
470,156 - Psest_0432 0.37 -0.4
470,156 - Psest_0432 0.37 +0.1
470,156 - Psest_0432 0.37 +0.3
470,156 - Psest_0432 0.37 +0.0
470,156 - Psest_0432 0.37 +0.1
470,156 - Psest_0432 0.37 -0.3
470,229 - Psest_0432 0.45 +0.2
470,229 - Psest_0432 0.45 +0.4
470,229 - Psest_0432 0.45 +0.1
470,271 - Psest_0432 0.50 -1.9
470,363 + Psest_0432 0.61 +1.7
470,363 + Psest_0432 0.61 +0.0
470,363 + Psest_0432 0.61 -0.5
470,363 + Psest_0432 0.61 -1.4
470,363 + Psest_0432 0.61 +0.1
470,363 + Psest_0432 0.61 -0.2
470,363 + Psest_0432 0.61 +1.7
470,363 + Psest_0432 0.61 +0.7
470,363 + Psest_0432 0.61 +0.1
470,364 - Psest_0432 0.61 +0.9
470,364 - Psest_0432 0.61 -0.1
470,364 - Psest_0432 0.61 -2.0
470,364 - Psest_0432 0.61 -0.4
470,364 - Psest_0432 0.61 -0.9
470,440 + Psest_0432 0.70 -0.4
470,440 + Psest_0432 0.70 +0.7
470,440 + Psest_0432 0.70 +1.2
470,441 - Psest_0432 0.70 +2.8
470,441 - Psest_0432 0.70 -0.5
470,552 + Psest_0432 0.83 +0.9
470,552 + Psest_0432 0.83 +1.0
470,552 + Psest_0432 0.83 +0.5
470,553 - Psest_0432 0.83 -1.1
470,583 - Psest_0432 0.86 -0.1
470,675 + +0.1
470,675 + -2.1
470,675 + -0.3
470,675 + -0.3
470,676 - -0.2
470,676 - +0.0
470,693 + -1.1
470,693 + +0.3
470,693 + -0.6
470,693 + +1.6
470,693 + -0.5
470,693 + +0.2
470,694 - -0.2
470,694 - -0.3
470,694 - -0.0
470,694 - -0.6
470,782 + +1.9
470,783 - +0.1
470,783 - +0.7
470,831 - +0.7

Or see this region's nucleotide sequence