Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2281

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2279 and Psest_2280 are separated by 85 nucleotidesPsest_2280 and Psest_2281 overlap by 20 nucleotidesPsest_2281 and Psest_2282 overlap by 8 nucleotidesPsest_2282 and Psest_2283 are separated by 102 nucleotides Psest_2279: Psest_2279 - coenzyme PQQ biosynthesis protein E, at 2,427,544 to 2,428,689 _2279 Psest_2280: Psest_2280 - Predicted membrane protein, at 2,428,775 to 2,429,278 _2280 Psest_2281: Psest_2281 - Phosphoserine aminotransferase, at 2,429,259 to 2,430,359 _2281 Psest_2282: Psest_2282 - Dihydroorotate dehydrogenase, at 2,430,352 to 2,431,197 _2282 Psest_2283: Psest_2283 - Parvulin-like peptidyl-prolyl isomerase, at 2,431,300 to 2,433,156 _2283 Position (kb) 2429 2430 2431Strain fitness (log2 ratio) -2 -1 0 1 2at 2428.259 kb on - strand, within Psest_2279at 2428.261 kb on + strand, within Psest_2279at 2428.261 kb on + strand, within Psest_2279at 2428.262 kb on - strand, within Psest_2279at 2428.262 kb on - strand, within Psest_2279at 2428.262 kb on - strand, within Psest_2279at 2428.620 kb on + strandat 2428.621 kb on - strandat 2428.747 kb on - strandat 2428.846 kb on + strand, within Psest_2280at 2428.846 kb on + strand, within Psest_2280at 2428.846 kb on + strand, within Psest_2280at 2428.846 kb on + strand, within Psest_2280at 2428.847 kb on - strand, within Psest_2280at 2428.847 kb on - strand, within Psest_2280at 2428.847 kb on - strand, within Psest_2280at 2429.040 kb on + strand, within Psest_2280at 2429.040 kb on + strand, within Psest_2280at 2429.041 kb on - strand, within Psest_2280at 2429.041 kb on - strand, within Psest_2280at 2429.189 kb on - strand, within Psest_2280at 2429.292 kb on + strandat 2429.292 kb on + strandat 2429.293 kb on - strandat 2429.293 kb on - strandat 2429.458 kb on + strand, within Psest_2281at 2429.478 kb on + strand, within Psest_2281at 2429.479 kb on - strand, within Psest_2281at 2429.479 kb on - strand, within Psest_2281at 2429.776 kb on + strand, within Psest_2281at 2429.848 kb on - strand, within Psest_2281at 2429.848 kb on - strand, within Psest_2281at 2429.890 kb on + strand, within Psest_2281at 2429.890 kb on + strand, within Psest_2281at 2429.891 kb on - strand, within Psest_2281at 2429.891 kb on - strand, within Psest_2281at 2429.897 kb on - strand, within Psest_2281at 2429.953 kb on - strand, within Psest_2281at 2429.953 kb on - strand, within Psest_2281at 2430.045 kb on - strand, within Psest_2281at 2430.126 kb on + strand, within Psest_2281at 2430.126 kb on + strand, within Psest_2281at 2430.272 kb on - strandat 2430.272 kb on - strandat 2430.347 kb on + strandat 2430.348 kb on - strandat 2430.357 kb on + strandat 2430.358 kb on - strandat 2430.479 kb on + strand, within Psest_2282at 2430.479 kb on + strand, within Psest_2282at 2430.722 kb on - strand, within Psest_2282at 2430.866 kb on + strand, within Psest_2282at 2430.939 kb on - strand, within Psest_2282

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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2,428,259 - Psest_2279 0.62 -0.0
2,428,261 + Psest_2279 0.63 +1.9
2,428,261 + Psest_2279 0.63 +0.5
2,428,262 - Psest_2279 0.63 +0.9
2,428,262 - Psest_2279 0.63 -0.6
2,428,262 - Psest_2279 0.63 -1.1
2,428,620 + -0.1
2,428,621 - -0.0
2,428,747 - +0.5
2,428,846 + Psest_2280 0.14 -1.3
2,428,846 + Psest_2280 0.14 -0.2
2,428,846 + Psest_2280 0.14 +1.1
2,428,846 + Psest_2280 0.14 -1.1
2,428,847 - Psest_2280 0.14 +0.5
2,428,847 - Psest_2280 0.14 -1.7
2,428,847 - Psest_2280 0.14 -1.1
2,429,040 + Psest_2280 0.53 +1.0
2,429,040 + Psest_2280 0.53 +0.1
2,429,041 - Psest_2280 0.53 -0.7
2,429,041 - Psest_2280 0.53 +0.1
2,429,189 - Psest_2280 0.82 +1.8
2,429,292 + -0.9
2,429,292 + -0.7
2,429,293 - -0.0
2,429,293 - -2.7
2,429,458 + Psest_2281 0.18 +0.2
2,429,478 + Psest_2281 0.20 -1.0
2,429,479 - Psest_2281 0.20 -1.1
2,429,479 - Psest_2281 0.20 -0.3
2,429,776 + Psest_2281 0.47 +1.1
2,429,848 - Psest_2281 0.53 -2.3
2,429,848 - Psest_2281 0.53 -0.6
2,429,890 + Psest_2281 0.57 -0.1
2,429,890 + Psest_2281 0.57 -0.5
2,429,891 - Psest_2281 0.57 -1.1
2,429,891 - Psest_2281 0.57 +1.3
2,429,897 - Psest_2281 0.58 -0.9
2,429,953 - Psest_2281 0.63 +0.1
2,429,953 - Psest_2281 0.63 +0.1
2,430,045 - Psest_2281 0.71 -0.4
2,430,126 + Psest_2281 0.79 +0.0
2,430,126 + Psest_2281 0.79 -1.3
2,430,272 - +0.3
2,430,272 - +1.2
2,430,347 + -0.3
2,430,348 - -1.6
2,430,357 + +0.8
2,430,358 - +0.4
2,430,479 + Psest_2282 0.15 -0.0
2,430,479 + Psest_2282 0.15 +1.0
2,430,722 - Psest_2282 0.44 +0.9
2,430,866 + Psest_2282 0.61 -1.0
2,430,939 - Psest_2282 0.69 +0.3

Or see this region's nucleotide sequence