Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0915

Experiment: Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0914 and Psest_0915 are separated by 325 nucleotidesPsest_0915 and Psest_0916 are separated by 566 nucleotides Psest_0914: Psest_0914 - Lhr-like helicases, at 992,050 to 994,269 _0914 Psest_0915: Psest_0915 - hypothetical protein, at 994,595 to 995,029 _0915 Psest_0916: Psest_0916 - Phage integrase family., at 995,596 to 996,489 _0916 Position (kb) 994 995 996Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 993.779 kb on + strand, within Psest_0914at 993.779 kb on + strand, within Psest_0914at 993.779 kb on + strand, within Psest_0914at 993.779 kb on + strand, within Psest_0914at 993.779 kb on + strand, within Psest_0914at 993.779 kb on + strand, within Psest_0914at 993.779 kb on + strand, within Psest_0914at 993.779 kb on + strand, within Psest_0914at 993.780 kb on - strand, within Psest_0914at 993.780 kb on - strand, within Psest_0914at 993.780 kb on - strand, within Psest_0914at 993.833 kb on - strand, within Psest_0914at 993.838 kb on + strand, within Psest_0914at 993.839 kb on - strand, within Psest_0914at 993.847 kb on - strand, within Psest_0914at 993.847 kb on - strand, within Psest_0914at 993.863 kb on + strand, within Psest_0914at 993.863 kb on + strand, within Psest_0914at 993.863 kb on + strand, within Psest_0914at 993.864 kb on - strand, within Psest_0914at 993.864 kb on - strand, within Psest_0914at 993.864 kb on - strand, within Psest_0914at 993.866 kb on + strand, within Psest_0914at 993.866 kb on + strand, within Psest_0914at 993.866 kb on + strand, within Psest_0914at 993.866 kb on + strand, within Psest_0914at 993.866 kb on + strand, within Psest_0914at 993.866 kb on + strand, within Psest_0914at 993.866 kb on + strand, within Psest_0914at 993.867 kb on - strand, within Psest_0914at 993.867 kb on - strand, within Psest_0914at 993.867 kb on - strand, within Psest_0914at 993.867 kb on - strand, within Psest_0914at 993.867 kb on - strand, within Psest_0914at 993.867 kb on - strand, within Psest_0914at 993.867 kb on - strand, within Psest_0914at 993.867 kb on - strand, within Psest_0914at 993.867 kb on - strand, within Psest_0914at 993.867 kb on - strand, within Psest_0914at 993.867 kb on - strand, within Psest_0914at 993.933 kb on + strand, within Psest_0914at 993.934 kb on - strand, within Psest_0914at 993.934 kb on - strand, within Psest_0914at 993.940 kb on + strand, within Psest_0914at 993.940 kb on + strand, within Psest_0914at 993.940 kb on + strand, within Psest_0914at 993.940 kb on + strand, within Psest_0914at 993.940 kb on + strand, within Psest_0914at 993.941 kb on - strand, within Psest_0914at 993.980 kb on + strand, within Psest_0914at 994.128 kb on - strandat 994.128 kb on - strandat 994.128 kb on - strandat 994.128 kb on - strandat 994.175 kb on + strandat 994.175 kb on + strandat 994.176 kb on - strandat 994.176 kb on - strandat 994.273 kb on + strandat 994.273 kb on + strandat 994.274 kb on - strandat 994.278 kb on + strandat 994.278 kb on + strandat 994.278 kb on + strandat 994.279 kb on - strandat 994.279 kb on - strandat 994.279 kb on - strandat 994.522 kb on + strandat 994.657 kb on - strand, within Psest_0915at 994.701 kb on - strand, within Psest_0915at 994.839 kb on + strand, within Psest_0915at 994.840 kb on - strand, within Psest_0915at 994.840 kb on - strand, within Psest_0915at 994.895 kb on + strand, within Psest_0915at 994.895 kb on + strand, within Psest_0915at 994.896 kb on - strand, within Psest_0915at 994.896 kb on - strand, within Psest_0915at 994.896 kb on - strand, within Psest_0915at 994.898 kb on - strand, within Psest_0915at 994.976 kb on + strand, within Psest_0915at 994.976 kb on + strand, within Psest_0915at 994.977 kb on - strand, within Psest_0915at 994.977 kb on - strand, within Psest_0915at 994.977 kb on - strand, within Psest_0915at 995.019 kb on - strandat 995.065 kb on + strandat 995.151 kb on + strandat 995.155 kb on + strandat 995.156 kb on - strandat 995.180 kb on + strandat 995.185 kb on + strandat 995.186 kb on - strandat 995.186 kb on - strandat 995.203 kb on + strandat 995.204 kb on - strandat 995.204 kb on - strandat 995.204 kb on - strandat 995.204 kb on - strandat 995.204 kb on - strandat 995.276 kb on - strandat 995.282 kb on - strandat 995.367 kb on + strandat 995.367 kb on + strandat 995.368 kb on - strandat 995.368 kb on - strandat 995.688 kb on + strand, within Psest_0916at 995.881 kb on - strand, within Psest_0916at 995.912 kb on + strand, within Psest_0916at 995.912 kb on + strand, within Psest_0916at 995.958 kb on - strand, within Psest_0916at 996.021 kb on + strand, within Psest_0916at 996.021 kb on + strand, within Psest_0916at 996.021 kb on + strand, within Psest_0916at 996.021 kb on + strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.022 kb on - strand, within Psest_0916at 996.023 kb on + strand, within Psest_0916at 996.023 kb on + strand, within Psest_0916at 996.023 kb on + strand, within Psest_0916at 996.024 kb on - strand, within Psest_0916at 996.024 kb on - strand, within Psest_0916at 996.024 kb on - strand, within Psest_0916

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
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993,779 + Psest_0914 0.78 +0.6
993,779 + Psest_0914 0.78 +1.3
993,779 + Psest_0914 0.78 +2.1
993,779 + Psest_0914 0.78 +0.9
993,779 + Psest_0914 0.78 +0.3
993,779 + Psest_0914 0.78 +2.5
993,779 + Psest_0914 0.78 -1.4
993,779 + Psest_0914 0.78 +2.5
993,780 - Psest_0914 0.78 -2.2
993,780 - Psest_0914 0.78 +0.4
993,780 - Psest_0914 0.78 +0.1
993,833 - Psest_0914 0.80 +1.2
993,838 + Psest_0914 0.81 -0.5
993,839 - Psest_0914 0.81 +1.7
993,847 - Psest_0914 0.81 +0.5
993,847 - Psest_0914 0.81 -0.4
993,863 + Psest_0914 0.82 +2.6
993,863 + Psest_0914 0.82 +0.7
993,863 + Psest_0914 0.82 -3.1
993,864 - Psest_0914 0.82 +1.7
993,864 - Psest_0914 0.82 +1.8
993,864 - Psest_0914 0.82 +1.2
993,866 + Psest_0914 0.82 +1.0
993,866 + Psest_0914 0.82 -0.7
993,866 + Psest_0914 0.82 +0.6
993,866 + Psest_0914 0.82 +0.5
993,866 + Psest_0914 0.82 +0.2
993,866 + Psest_0914 0.82 +0.4
993,866 + Psest_0914 0.82 -2.5
993,867 - Psest_0914 0.82 +1.7
993,867 - Psest_0914 0.82 +1.3
993,867 - Psest_0914 0.82 +0.7
993,867 - Psest_0914 0.82 +0.1
993,867 - Psest_0914 0.82 -0.9
993,867 - Psest_0914 0.82 +0.6
993,867 - Psest_0914 0.82 -0.2
993,867 - Psest_0914 0.82 -1.2
993,867 - Psest_0914 0.82 -1.7
993,867 - Psest_0914 0.82 -2.2
993,867 - Psest_0914 0.82 +0.3
993,933 + Psest_0914 0.85 -1.2
993,934 - Psest_0914 0.85 -0.9
993,934 - Psest_0914 0.85 +1.4
993,940 + Psest_0914 0.85 +2.4
993,940 + Psest_0914 0.85 +1.8
993,940 + Psest_0914 0.85 -1.0
993,940 + Psest_0914 0.85 +1.4
993,940 + Psest_0914 0.85 -1.6
993,941 - Psest_0914 0.85 -1.7
993,980 + Psest_0914 0.87 -1.2
994,128 - +0.4
994,128 - -1.8
994,128 - -1.3
994,128 - -1.6
994,175 + +0.1
994,175 + -1.6
994,176 - -3.0
994,176 - +0.9
994,273 + +1.3
994,273 + +0.3
994,274 - +1.1
994,278 + +0.8
994,278 + +2.3
994,278 + +0.6
994,279 - +0.7
994,279 - -0.9
994,279 - -0.7
994,522 + +1.7
994,657 - Psest_0915 0.14 -0.9
994,701 - Psest_0915 0.24 +0.2
994,839 + Psest_0915 0.56 -0.7
994,840 - Psest_0915 0.56 -1.3
994,840 - Psest_0915 0.56 -0.6
994,895 + Psest_0915 0.69 -1.9
994,895 + Psest_0915 0.69 -1.0
994,896 - Psest_0915 0.69 -0.0
994,896 - Psest_0915 0.69 -0.2
994,896 - Psest_0915 0.69 -1.7
994,898 - Psest_0915 0.70 -1.5
994,976 + Psest_0915 0.88 +0.2
994,976 + Psest_0915 0.88 -0.6
994,977 - Psest_0915 0.88 -1.6
994,977 - Psest_0915 0.88 -0.7
994,977 - Psest_0915 0.88 +0.3
995,019 - +2.2
995,065 + -1.3
995,151 + +1.5
995,155 + +0.3
995,156 - -1.0
995,180 + -0.9
995,185 + -0.7
995,186 - -0.6
995,186 - +2.7
995,203 + -0.6
995,204 - +2.1
995,204 - -0.6
995,204 - +1.5
995,204 - -1.1
995,204 - -2.3
995,276 - -1.3
995,282 - -1.9
995,367 + -0.3
995,367 + +0.0
995,368 - -0.5
995,368 - -1.6
995,688 + Psest_0916 0.10 -0.9
995,881 - Psest_0916 0.32 +1.1
995,912 + Psest_0916 0.35 +1.2
995,912 + Psest_0916 0.35 -0.7
995,958 - Psest_0916 0.40 +1.2
996,021 + Psest_0916 0.48 +1.0
996,021 + Psest_0916 0.48 +0.4
996,021 + Psest_0916 0.48 -1.4
996,021 + Psest_0916 0.48 -3.0
996,022 - Psest_0916 0.48 +0.0
996,022 - Psest_0916 0.48 +0.8
996,022 - Psest_0916 0.48 +0.8
996,022 - Psest_0916 0.48 -1.4
996,022 - Psest_0916 0.48 -1.4
996,022 - Psest_0916 0.48 -1.4
996,022 - Psest_0916 0.48 +0.7
996,023 + Psest_0916 0.48 +0.4
996,023 + Psest_0916 0.48 +1.0
996,023 + Psest_0916 0.48 +1.1
996,024 - Psest_0916 0.48 +1.3
996,024 - Psest_0916 0.48 +0.1
996,024 - Psest_0916 0.48 -2.3

Or see this region's nucleotide sequence