Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0649

Experiment: Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0648 and Psest_0649 are separated by 11 nucleotidesPsest_0649 and Psest_0650 are separated by 196 nucleotidesPsest_0650 and Psest_0651 are separated by 94 nucleotides Psest_0648: Psest_0648 - Lysine/ornithine N-monooxygenase, at 702,987 to 704,306 _0648 Psest_0649: Psest_0649 - Glutamate decarboxylase and related PLP-dependent proteins, at 704,318 to 705,841 _0649 Psest_0650: Psest_0650 - RNA polymerase sigma factor, sigma-70 family, at 706,038 to 706,535 _0650 Psest_0651: Psest_0651 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 706,630 to 709,023 _0651 Position (kb) 704 705 706Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 703.333 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.472 kb on - strand, within Psest_0648at 703.472 kb on - strand, within Psest_0648at 703.472 kb on - strand, within Psest_0648at 703.507 kb on + strand, within Psest_0648at 703.507 kb on + strand, within Psest_0648at 703.507 kb on + strand, within Psest_0648at 703.508 kb on - strand, within Psest_0648at 703.567 kb on + strand, within Psest_0648at 703.568 kb on - strand, within Psest_0648at 703.568 kb on - strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.613 kb on - strand, within Psest_0648at 703.693 kb on + strand, within Psest_0648at 703.696 kb on + strand, within Psest_0648at 703.696 kb on + strand, within Psest_0648at 703.696 kb on + strand, within Psest_0648at 703.696 kb on + strand, within Psest_0648at 703.697 kb on - strand, within Psest_0648at 703.774 kb on + strand, within Psest_0648at 703.774 kb on + strand, within Psest_0648at 703.774 kb on + strand, within Psest_0648at 703.775 kb on - strand, within Psest_0648at 703.775 kb on - strand, within Psest_0648at 703.775 kb on - strand, within Psest_0648at 703.775 kb on - strand, within Psest_0648at 703.828 kb on + strand, within Psest_0648at 703.828 kb on + strand, within Psest_0648at 703.829 kb on - strand, within Psest_0648at 703.851 kb on + strand, within Psest_0648at 703.852 kb on - strand, within Psest_0648at 704.002 kb on + strand, within Psest_0648at 704.011 kb on + strand, within Psest_0648at 704.011 kb on + strand, within Psest_0648at 704.011 kb on + strand, within Psest_0648at 704.012 kb on - strand, within Psest_0648at 704.012 kb on - strand, within Psest_0648at 704.047 kb on + strand, within Psest_0648at 704.047 kb on + strand, within Psest_0648at 704.048 kb on - strand, within Psest_0648at 704.048 kb on - strand, within Psest_0648at 704.048 kb on - strand, within Psest_0648at 704.048 kb on - strand, within Psest_0648at 704.056 kb on + strand, within Psest_0648at 704.080 kb on + strand, within Psest_0648at 704.080 kb on + strand, within Psest_0648at 704.080 kb on + strand, within Psest_0648at 704.081 kb on - strand, within Psest_0648at 704.186 kb on + strandat 704.187 kb on - strandat 704.293 kb on + strandat 704.293 kb on + strandat 704.293 kb on + strandat 704.294 kb on - strandat 704.294 kb on - strandat 704.294 kb on - strandat 704.294 kb on - strandat 704.339 kb on + strandat 704.340 kb on - strandat 704.671 kb on + strand, within Psest_0649at 704.672 kb on - strand, within Psest_0649at 704.817 kb on + strand, within Psest_0649at 704.817 kb on + strand, within Psest_0649at 704.817 kb on + strand, within Psest_0649at 704.817 kb on + strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.967 kb on + strand, within Psest_0649at 705.552 kb on + strand, within Psest_0649at 705.552 kb on + strand, within Psest_0649at 705.552 kb on + strand, within Psest_0649at 705.553 kb on - strand, within Psest_0649at 705.570 kb on + strand, within Psest_0649at 705.570 kb on + strand, within Psest_0649at 705.570 kb on + strand, within Psest_0649at 705.588 kb on + strand, within Psest_0649at 705.589 kb on - strand, within Psest_0649at 705.589 kb on - strand, within Psest_0649at 706.040 kb on - strandat 706.089 kb on - strand, within Psest_0650at 706.089 kb on - strand, within Psest_0650at 706.200 kb on + strand, within Psest_0650at 706.200 kb on + strand, within Psest_0650at 706.200 kb on + strand, within Psest_0650at 706.201 kb on - strand, within Psest_0650at 706.351 kb on + strand, within Psest_0650at 706.351 kb on + strand, within Psest_0650at 706.352 kb on - strand, within Psest_0650at 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.492 kb on + strandat 706.493 kb on - strandat 706.493 kb on - strandat 706.493 kb on - strandat 706.493 kb on - strandat 706.568 kb on - strandat 706.712 kb on + strandat 706.712 kb on + strandat 706.715 kb on + strandat 706.715 kb on + strandat 706.715 kb on + strandat 706.715 kb on + strandat 706.716 kb on - strandat 706.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
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703,333 + Psest_0648 0.26 +0.9
703,459 + Psest_0648 0.36 +0.6
703,459 + Psest_0648 0.36 -0.5
703,459 + Psest_0648 0.36 -2.0
703,459 + Psest_0648 0.36 +1.1
703,459 + Psest_0648 0.36 +2.7
703,459 + Psest_0648 0.36 +1.0
703,459 + Psest_0648 0.36 +1.0
703,459 + Psest_0648 0.36 -1.0
703,459 + Psest_0648 0.36 -0.5
703,459 + Psest_0648 0.36 +1.2
703,459 + Psest_0648 0.36 -0.6
703,472 - Psest_0648 0.37 +2.3
703,472 - Psest_0648 0.37 +2.1
703,472 - Psest_0648 0.37 -1.8
703,507 + Psest_0648 0.39 -1.1
703,507 + Psest_0648 0.39 +2.2
703,507 + Psest_0648 0.39 -1.5
703,508 - Psest_0648 0.39 +0.1
703,567 + Psest_0648 0.44 -1.7
703,568 - Psest_0648 0.44 -0.3
703,568 - Psest_0648 0.44 +3.9
703,612 + Psest_0648 0.47 -1.9
703,612 + Psest_0648 0.47 -0.6
703,612 + Psest_0648 0.47 +2.6
703,612 + Psest_0648 0.47 +0.2
703,612 + Psest_0648 0.47 -1.0
703,613 - Psest_0648 0.47 +0.9
703,693 + Psest_0648 0.53 -1.3
703,696 + Psest_0648 0.54 +2.7
703,696 + Psest_0648 0.54 +0.0
703,696 + Psest_0648 0.54 +2.1
703,696 + Psest_0648 0.54 +0.5
703,697 - Psest_0648 0.54 -2.0
703,774 + Psest_0648 0.60 +2.0
703,774 + Psest_0648 0.60 -0.3
703,774 + Psest_0648 0.60 +1.3
703,775 - Psest_0648 0.60 -0.6
703,775 - Psest_0648 0.60 -2.2
703,775 - Psest_0648 0.60 -1.6
703,775 - Psest_0648 0.60 -2.5
703,828 + Psest_0648 0.64 -1.5
703,828 + Psest_0648 0.64 +1.8
703,829 - Psest_0648 0.64 -1.5
703,851 + Psest_0648 0.65 +2.6
703,852 - Psest_0648 0.66 +0.8
704,002 + Psest_0648 0.77 +1.6
704,011 + Psest_0648 0.78 +2.8
704,011 + Psest_0648 0.78 +2.8
704,011 + Psest_0648 0.78 -0.1
704,012 - Psest_0648 0.78 -0.8
704,012 - Psest_0648 0.78 +1.5
704,047 + Psest_0648 0.80 +1.3
704,047 + Psest_0648 0.80 -0.3
704,048 - Psest_0648 0.80 -3.1
704,048 - Psest_0648 0.80 -1.4
704,048 - Psest_0648 0.80 +1.3
704,048 - Psest_0648 0.80 -1.9
704,056 + Psest_0648 0.81 +0.7
704,080 + Psest_0648 0.83 -2.4
704,080 + Psest_0648 0.83 +0.6
704,080 + Psest_0648 0.83 +0.2
704,081 - Psest_0648 0.83 -0.7
704,186 + -0.7
704,187 - -2.1
704,293 + +2.9
704,293 + -2.2
704,293 + +0.7
704,294 - -0.5
704,294 - +0.2
704,294 - +0.9
704,294 - +0.5
704,339 + +0.5
704,340 - +0.1
704,671 + Psest_0649 0.23 -0.9
704,672 - Psest_0649 0.23 +2.5
704,817 + Psest_0649 0.33 -1.6
704,817 + Psest_0649 0.33 +0.0
704,817 + Psest_0649 0.33 -1.7
704,817 + Psest_0649 0.33 +0.0
704,818 - Psest_0649 0.33 -1.0
704,818 - Psest_0649 0.33 +0.6
704,818 - Psest_0649 0.33 -1.3
704,818 - Psest_0649 0.33 -1.5
704,818 - Psest_0649 0.33 -0.8
704,818 - Psest_0649 0.33 -0.1
704,818 - Psest_0649 0.33 -0.6
704,818 - Psest_0649 0.33 -0.9
704,967 + Psest_0649 0.43 -1.4
705,552 + Psest_0649 0.81 -2.2
705,552 + Psest_0649 0.81 +0.1
705,552 + Psest_0649 0.81 -0.6
705,553 - Psest_0649 0.81 -1.6
705,570 + Psest_0649 0.82 -3.1
705,570 + Psest_0649 0.82 -3.6
705,570 + Psest_0649 0.82 -0.1
705,588 + Psest_0649 0.83 -1.1
705,589 - Psest_0649 0.83 +0.8
705,589 - Psest_0649 0.83 +1.5
706,040 - -0.3
706,089 - Psest_0650 0.10 +0.6
706,089 - Psest_0650 0.10 -1.3
706,200 + Psest_0650 0.33 -0.4
706,200 + Psest_0650 0.33 +1.2
706,200 + Psest_0650 0.33 -0.2
706,201 - Psest_0650 0.33 -0.0
706,351 + Psest_0650 0.63 -0.1
706,351 + Psest_0650 0.63 -0.1
706,352 - Psest_0650 0.63 -0.4
706,492 + -0.4
706,492 + -1.3
706,492 + -0.0
706,492 + -1.3
706,492 + +0.3
706,492 + -1.2
706,492 + -1.4
706,492 + -1.3
706,492 + +2.8
706,492 + -0.4
706,493 - -0.4
706,493 - +1.5
706,493 - +1.0
706,493 - -0.4
706,568 - -0.5
706,712 + -2.3
706,712 + -0.8
706,715 + -2.0
706,715 + -2.8
706,715 + -0.7
706,715 + +1.0
706,716 - -0.4
706,822 - +0.7

Or see this region's nucleotide sequence