Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3800

Experiment: Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3799 and Psest_3800 are separated by 171 nucleotidesPsest_3800 and Psest_3801 are separated by 169 nucleotidesPsest_3801 and Psest_3802 are separated by 3 nucleotides Psest_3799: Psest_3799 - Methyl-accepting chemotaxis protein, at 3,968,115 to 3,969,680 _3799 Psest_3800: Psest_3800 - 3-hydroxyacyl-CoA dehydrogenase, at 3,969,852 to 3,971,378 _3800 Psest_3801: Psest_3801 - uncharacterized domain 1, at 3,971,548 to 3,971,940 _3801 Psest_3802: Psest_3802 - hypothetical protein, at 3,971,944 to 3,973,287 _3802 Position (kb) 3969 3970 3971 3972Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3968.922 kb on - strand, within Psest_3799at 3968.922 kb on - strand, within Psest_3799at 3968.923 kb on + strand, within Psest_3799at 3968.923 kb on + strand, within Psest_3799at 3968.923 kb on + strand, within Psest_3799at 3968.923 kb on + strand, within Psest_3799at 3968.923 kb on + strand, within Psest_3799at 3968.923 kb on + strand, within Psest_3799at 3968.923 kb on + strand, within Psest_3799at 3968.923 kb on + strand, within Psest_3799at 3968.924 kb on - strand, within Psest_3799at 3968.924 kb on - strand, within Psest_3799at 3968.924 kb on - strand, within Psest_3799at 3968.924 kb on - strand, within Psest_3799at 3968.924 kb on - strand, within Psest_3799at 3968.924 kb on - strand, within Psest_3799at 3968.924 kb on - strand, within Psest_3799at 3968.924 kb on - strand, within Psest_3799at 3968.924 kb on - strand, within Psest_3799at 3968.924 kb on - strand, within Psest_3799at 3968.997 kb on - strand, within Psest_3799at 3969.409 kb on + strand, within Psest_3799at 3969.571 kb on - strandat 3969.624 kb on + strandat 3969.624 kb on + strandat 3969.624 kb on + strandat 3969.624 kb on + strandat 3969.624 kb on + strandat 3969.624 kb on + strandat 3969.624 kb on + strandat 3969.624 kb on + strandat 3969.624 kb on + strandat 3969.625 kb on - strandat 3969.625 kb on - strandat 3969.625 kb on - strandat 3969.625 kb on - strandat 3969.625 kb on - strandat 3969.719 kb on + strandat 3969.719 kb on + strandat 3969.745 kb on + strandat 3969.746 kb on - strandat 3969.746 kb on - strandat 3969.746 kb on - strandat 3969.897 kb on + strandat 3969.927 kb on - strandat 3970.001 kb on - strandat 3970.534 kb on + strand, within Psest_3800at 3970.540 kb on + strand, within Psest_3800at 3970.541 kb on - strand, within Psest_3800at 3970.543 kb on + strand, within Psest_3800at 3970.544 kb on - strand, within Psest_3800at 3970.610 kb on + strand, within Psest_3800at 3970.610 kb on + strand, within Psest_3800at 3970.611 kb on - strand, within Psest_3800at 3970.611 kb on - strand, within Psest_3800at 3970.611 kb on - strand, within Psest_3800at 3970.612 kb on + strand, within Psest_3800at 3970.628 kb on - strand, within Psest_3800at 3970.628 kb on - strand, within Psest_3800at 3970.640 kb on - strand, within Psest_3800at 3970.668 kb on - strand, within Psest_3800at 3970.795 kb on + strand, within Psest_3800at 3971.007 kb on - strand, within Psest_3800at 3971.030 kb on + strand, within Psest_3800at 3971.748 kb on + strand, within Psest_3801at 3971.840 kb on + strand, within Psest_3801at 3971.840 kb on + strand, within Psest_3801at 3971.840 kb on + strand, within Psest_3801at 3971.840 kb on + strand, within Psest_3801at 3971.840 kb on + strand, within Psest_3801at 3971.840 kb on + strand, within Psest_3801at 3971.840 kb on + strand, within Psest_3801at 3971.840 kb on + strand, within Psest_3801at 3971.840 kb on + strand, within Psest_3801at 3971.840 kb on + strand, within Psest_3801at 3971.841 kb on - strand, within Psest_3801at 3971.841 kb on - strand, within Psest_3801at 3971.841 kb on - strand, within Psest_3801at 3971.841 kb on - strand, within Psest_3801at 3971.841 kb on - strand, within Psest_3801at 3971.841 kb on - strand, within Psest_3801at 3971.841 kb on - strand, within Psest_3801at 3971.844 kb on + strand, within Psest_3801at 3971.844 kb on + strand, within Psest_3801at 3971.845 kb on - strand, within Psest_3801at 3971.845 kb on - strand, within Psest_3801at 3971.906 kb on - strandat 3971.906 kb on - strandat 3971.906 kb on - strandat 3971.906 kb on - strandat 3971.906 kb on - strandat 3971.906 kb on - strandat 3972.035 kb on + strandat 3972.035 kb on + strandat 3972.036 kb on - strandat 3972.036 kb on - strandat 3972.038 kb on + strandat 3972.038 kb on + strandat 3972.039 kb on - strandat 3972.039 kb on - strandat 3972.181 kb on + strand, within Psest_3802at 3972.181 kb on + strand, within Psest_3802at 3972.181 kb on + strand, within Psest_3802at 3972.181 kb on + strand, within Psest_3802at 3972.182 kb on - strand, within Psest_3802at 3972.185 kb on - strand, within Psest_3802at 3972.185 kb on - strand, within Psest_3802at 3972.185 kb on - strand, within Psest_3802at 3972.196 kb on - strand, within Psest_3802at 3972.301 kb on + strand, within Psest_3802at 3972.301 kb on + strand, within Psest_3802at 3972.302 kb on - strand, within Psest_3802at 3972.302 kb on - strand, within Psest_3802

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
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3,968,922 - Psest_3799 0.52 -0.5
3,968,922 - Psest_3799 0.52 -2.4
3,968,923 + Psest_3799 0.52 -0.5
3,968,923 + Psest_3799 0.52 +2.7
3,968,923 + Psest_3799 0.52 -0.7
3,968,923 + Psest_3799 0.52 +0.2
3,968,923 + Psest_3799 0.52 -0.9
3,968,923 + Psest_3799 0.52 +0.7
3,968,923 + Psest_3799 0.52 +1.0
3,968,923 + Psest_3799 0.52 +0.7
3,968,924 - Psest_3799 0.52 -0.9
3,968,924 - Psest_3799 0.52 -0.5
3,968,924 - Psest_3799 0.52 +1.7
3,968,924 - Psest_3799 0.52 +1.8
3,968,924 - Psest_3799 0.52 -0.1
3,968,924 - Psest_3799 0.52 +0.4
3,968,924 - Psest_3799 0.52 +0.6
3,968,924 - Psest_3799 0.52 -0.6
3,968,924 - Psest_3799 0.52 -1.4
3,968,924 - Psest_3799 0.52 -2.1
3,968,997 - Psest_3799 0.56 +1.4
3,969,409 + Psest_3799 0.83 +0.2
3,969,571 - +1.4
3,969,624 + -0.0
3,969,624 + +0.2
3,969,624 + +0.5
3,969,624 + +2.4
3,969,624 + -1.1
3,969,624 + +1.0
3,969,624 + -0.8
3,969,624 + -2.4
3,969,624 + +1.7
3,969,625 - +1.1
3,969,625 - -0.9
3,969,625 - +1.9
3,969,625 - -1.0
3,969,625 - +1.5
3,969,719 + -2.2
3,969,719 + +0.5
3,969,745 + -0.2
3,969,746 - +0.4
3,969,746 - +0.4
3,969,746 - -1.5
3,969,897 + +1.1
3,969,927 - -0.2
3,970,001 - +1.5
3,970,534 + Psest_3800 0.45 -2.3
3,970,540 + Psest_3800 0.45 -0.6
3,970,541 - Psest_3800 0.45 +0.8
3,970,543 + Psest_3800 0.45 +0.0
3,970,544 - Psest_3800 0.45 -2.5
3,970,610 + Psest_3800 0.50 -1.9
3,970,610 + Psest_3800 0.50 +1.7
3,970,611 - Psest_3800 0.50 +0.7
3,970,611 - Psest_3800 0.50 -1.2
3,970,611 - Psest_3800 0.50 -0.5
3,970,612 + Psest_3800 0.50 -1.5
3,970,628 - Psest_3800 0.51 -1.5
3,970,628 - Psest_3800 0.51 -2.4
3,970,640 - Psest_3800 0.52 +0.2
3,970,668 - Psest_3800 0.53 -1.6
3,970,795 + Psest_3800 0.62 +2.1
3,971,007 - Psest_3800 0.76 -0.5
3,971,030 + Psest_3800 0.77 +0.0
3,971,748 + Psest_3801 0.51 +1.1
3,971,840 + Psest_3801 0.74 +0.0
3,971,840 + Psest_3801 0.74 +0.9
3,971,840 + Psest_3801 0.74 -0.7
3,971,840 + Psest_3801 0.74 -1.9
3,971,840 + Psest_3801 0.74 +0.1
3,971,840 + Psest_3801 0.74 +2.4
3,971,840 + Psest_3801 0.74 +1.1
3,971,840 + Psest_3801 0.74 +0.7
3,971,840 + Psest_3801 0.74 -1.4
3,971,840 + Psest_3801 0.74 +2.8
3,971,841 - Psest_3801 0.75 -0.1
3,971,841 - Psest_3801 0.75 -1.5
3,971,841 - Psest_3801 0.75 -0.6
3,971,841 - Psest_3801 0.75 +0.5
3,971,841 - Psest_3801 0.75 +2.8
3,971,841 - Psest_3801 0.75 -0.8
3,971,841 - Psest_3801 0.75 +1.0
3,971,844 + Psest_3801 0.75 -0.3
3,971,844 + Psest_3801 0.75 -0.9
3,971,845 - Psest_3801 0.76 +0.2
3,971,845 - Psest_3801 0.76 -0.5
3,971,906 - -2.1
3,971,906 - -1.0
3,971,906 - +0.1
3,971,906 - -1.0
3,971,906 - -0.8
3,971,906 - +1.8
3,972,035 + -0.7
3,972,035 + -2.3
3,972,036 - -1.8
3,972,036 - -0.1
3,972,038 + -0.1
3,972,038 + -1.0
3,972,039 - +2.4
3,972,039 - -2.2
3,972,181 + Psest_3802 0.18 +1.3
3,972,181 + Psest_3802 0.18 +0.6
3,972,181 + Psest_3802 0.18 -1.3
3,972,181 + Psest_3802 0.18 +0.5
3,972,182 - Psest_3802 0.18 -2.7
3,972,185 - Psest_3802 0.18 -1.7
3,972,185 - Psest_3802 0.18 -0.1
3,972,185 - Psest_3802 0.18 +1.3
3,972,196 - Psest_3802 0.19 -1.6
3,972,301 + Psest_3802 0.27 +1.0
3,972,301 + Psest_3802 0.27 -0.3
3,972,302 - Psest_3802 0.27 -0.6
3,972,302 - Psest_3802 0.27 -3.2

Or see this region's nucleotide sequence