Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0287

Experiment: Paraquat dichloride 0.015 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0286 and Psest_0287 overlap by 4 nucleotidesPsest_0287 and Psest_0288 overlap by 1 nucleotides Psest_0286: Psest_0286 - pilus retraction protein PilT, at 301,434 to 302,579 _0286 Psest_0287: Psest_0287 - probable DNA metabolism protein, at 302,576 to 303,412 _0287 Psest_0288: Psest_0288 - putative DNA modification/repair radical SAM protein, at 303,412 to 304,623 _0288 Position (kb) 302 303 304Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 301.693 kb on - strand, within Psest_0286at 301.693 kb on - strand, within Psest_0286at 302.070 kb on + strand, within Psest_0286at 302.070 kb on + strand, within Psest_0286at 302.071 kb on - strand, within Psest_0286at 302.071 kb on - strand, within Psest_0286at 302.071 kb on - strand, within Psest_0286at 302.397 kb on + strand, within Psest_0286at 302.397 kb on + strand, within Psest_0286at 302.397 kb on + strand, within Psest_0286at 302.398 kb on - strand, within Psest_0286at 302.398 kb on - strand, within Psest_0286at 302.398 kb on - strand, within Psest_0286at 302.398 kb on - strand, within Psest_0286at 302.406 kb on + strand, within Psest_0286at 302.406 kb on + strand, within Psest_0286at 302.406 kb on + strand, within Psest_0286at 302.406 kb on + strand, within Psest_0286at 302.406 kb on + strand, within Psest_0286at 302.406 kb on + strand, within Psest_0286at 302.407 kb on - strand, within Psest_0286at 302.407 kb on - strand, within Psest_0286at 302.407 kb on - strand, within Psest_0286at 302.407 kb on - strand, within Psest_0286at 302.407 kb on - strand, within Psest_0286at 302.407 kb on - strand, within Psest_0286at 302.407 kb on - strand, within Psest_0286at 302.407 kb on - strand, within Psest_0286at 302.407 kb on - strand, within Psest_0286at 302.407 kb on - strand, within Psest_0286at 302.427 kb on + strand, within Psest_0286at 302.427 kb on + strand, within Psest_0286at 302.428 kb on - strand, within Psest_0286at 302.428 kb on - strand, within Psest_0286at 302.428 kb on - strand, within Psest_0286at 302.428 kb on - strand, within Psest_0286at 302.428 kb on - strand, within Psest_0286at 302.784 kb on + strand, within Psest_0287at 302.784 kb on + strand, within Psest_0287at 302.784 kb on + strand, within Psest_0287at 302.785 kb on - strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.799 kb on - strand, within Psest_0287at 302.865 kb on + strand, within Psest_0287at 302.865 kb on + strand, within Psest_0287at 302.865 kb on + strand, within Psest_0287at 302.865 kb on + strand, within Psest_0287at 302.865 kb on + strand, within Psest_0287at 302.865 kb on + strand, within Psest_0287at 302.866 kb on - strand, within Psest_0287at 302.866 kb on - strand, within Psest_0287at 302.866 kb on - strand, within Psest_0287at 302.866 kb on - strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.969 kb on + strand, within Psest_0287at 302.969 kb on + strand, within Psest_0287at 302.969 kb on + strand, within Psest_0287at 302.969 kb on + strand, within Psest_0287at 302.970 kb on - strand, within Psest_0287at 302.970 kb on - strand, within Psest_0287at 303.092 kb on + strand, within Psest_0287at 303.092 kb on + strand, within Psest_0287at 303.092 kb on + strand, within Psest_0287at 303.092 kb on + strand, within Psest_0287at 303.092 kb on + strand, within Psest_0287at 303.093 kb on - strand, within Psest_0287at 303.093 kb on - strand, within Psest_0287at 303.093 kb on - strand, within Psest_0287at 303.093 kb on - strand, within Psest_0287at 303.542 kb on - strand, within Psest_0288at 303.542 kb on - strand, within Psest_0288at 303.777 kb on + strand, within Psest_0288at 303.795 kb on - strand, within Psest_0288at 303.875 kb on + strand, within Psest_0288at 303.875 kb on + strand, within Psest_0288at 303.875 kb on + strand, within Psest_0288at 303.876 kb on - strand, within Psest_0288at 303.876 kb on - strand, within Psest_0288at 303.878 kb on + strand, within Psest_0288at 303.878 kb on + strand, within Psest_0288at 303.878 kb on + strand, within Psest_0288at 303.879 kb on - strand, within Psest_0288at 303.879 kb on - strand, within Psest_0288at 303.896 kb on + strand, within Psest_0288at 303.897 kb on - strand, within Psest_0288at 304.205 kb on + strand, within Psest_0288at 304.205 kb on + strand, within Psest_0288at 304.205 kb on + strand, within Psest_0288at 304.206 kb on - strand, within Psest_0288at 304.206 kb on - strand, within Psest_0288at 304.268 kb on + strand, within Psest_0288at 304.269 kb on - strand, within Psest_0288at 304.269 kb on - strand, within Psest_0288at 304.410 kb on - strand, within Psest_0288

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
remove
301,693 - Psest_0286 0.23 -1.0
301,693 - Psest_0286 0.23 -0.1
302,070 + Psest_0286 0.55 +1.2
302,070 + Psest_0286 0.55 -0.3
302,071 - Psest_0286 0.56 -0.1
302,071 - Psest_0286 0.56 -0.0
302,071 - Psest_0286 0.56 +1.6
302,397 + Psest_0286 0.84 +0.5
302,397 + Psest_0286 0.84 -1.7
302,397 + Psest_0286 0.84 +1.4
302,398 - Psest_0286 0.84 -0.1
302,398 - Psest_0286 0.84 -0.0
302,398 - Psest_0286 0.84 +2.0
302,398 - Psest_0286 0.84 +2.4
302,406 + Psest_0286 0.85 -0.0
302,406 + Psest_0286 0.85 -1.4
302,406 + Psest_0286 0.85 +2.3
302,406 + Psest_0286 0.85 +2.7
302,406 + Psest_0286 0.85 +1.6
302,406 + Psest_0286 0.85 +1.5
302,407 - Psest_0286 0.85 +0.6
302,407 - Psest_0286 0.85 +0.4
302,407 - Psest_0286 0.85 +1.6
302,407 - Psest_0286 0.85 +0.5
302,407 - Psest_0286 0.85 +0.7
302,407 - Psest_0286 0.85 +0.2
302,407 - Psest_0286 0.85 -0.8
302,407 - Psest_0286 0.85 +0.1
302,407 - Psest_0286 0.85 -0.2
302,407 - Psest_0286 0.85 +1.7
302,427 + Psest_0286 0.87 -1.6
302,427 + Psest_0286 0.87 -3.1
302,428 - Psest_0286 0.87 +0.5
302,428 - Psest_0286 0.87 -0.0
302,428 - Psest_0286 0.87 +0.9
302,428 - Psest_0286 0.87 +1.4
302,428 - Psest_0286 0.87 +0.3
302,784 + Psest_0287 0.25 +0.7
302,784 + Psest_0287 0.25 +0.6
302,784 + Psest_0287 0.25 +1.8
302,785 - Psest_0287 0.25 +2.4
302,787 + Psest_0287 0.25 -2.2
302,787 + Psest_0287 0.25 +0.7
302,787 + Psest_0287 0.25 -0.4
302,787 + Psest_0287 0.25 -1.4
302,787 + Psest_0287 0.25 -1.6
302,787 + Psest_0287 0.25 -2.0
302,787 + Psest_0287 0.25 -0.4
302,787 + Psest_0287 0.25 +1.5
302,788 - Psest_0287 0.25 -1.0
302,788 - Psest_0287 0.25 +0.3
302,788 - Psest_0287 0.25 +0.6
302,788 - Psest_0287 0.25 -0.3
302,788 - Psest_0287 0.25 -2.7
302,788 - Psest_0287 0.25 +1.2
302,788 - Psest_0287 0.25 +0.9
302,788 - Psest_0287 0.25 +0.3
302,799 - Psest_0287 0.27 +2.0
302,865 + Psest_0287 0.35 +0.5
302,865 + Psest_0287 0.35 -0.8
302,865 + Psest_0287 0.35 +3.2
302,865 + Psest_0287 0.35 +2.1
302,865 + Psest_0287 0.35 +0.3
302,865 + Psest_0287 0.35 -0.1
302,866 - Psest_0287 0.35 +0.5
302,866 - Psest_0287 0.35 +1.6
302,866 - Psest_0287 0.35 -1.0
302,866 - Psest_0287 0.35 -2.4
302,868 + Psest_0287 0.35 +0.8
302,868 + Psest_0287 0.35 -1.0
302,868 + Psest_0287 0.35 -0.6
302,868 + Psest_0287 0.35 -0.7
302,868 + Psest_0287 0.35 -1.7
302,868 + Psest_0287 0.35 -0.9
302,868 + Psest_0287 0.35 +2.0
302,868 + Psest_0287 0.35 +0.4
302,868 + Psest_0287 0.35 +0.6
302,868 + Psest_0287 0.35 +2.0
302,868 + Psest_0287 0.35 +1.3
302,869 - Psest_0287 0.35 +1.0
302,869 - Psest_0287 0.35 -1.5
302,869 - Psest_0287 0.35 -0.3
302,869 - Psest_0287 0.35 +1.7
302,869 - Psest_0287 0.35 -1.6
302,869 - Psest_0287 0.35 +0.1
302,869 - Psest_0287 0.35 +0.7
302,869 - Psest_0287 0.35 -0.5
302,869 - Psest_0287 0.35 +1.4
302,869 - Psest_0287 0.35 -0.6
302,869 - Psest_0287 0.35 +0.9
302,869 - Psest_0287 0.35 +1.2
302,869 - Psest_0287 0.35 +0.3
302,869 - Psest_0287 0.35 +0.7
302,969 + Psest_0287 0.47 +1.8
302,969 + Psest_0287 0.47 +0.5
302,969 + Psest_0287 0.47 +0.1
302,969 + Psest_0287 0.47 -2.4
302,970 - Psest_0287 0.47 -0.6
302,970 - Psest_0287 0.47 +4.1
303,092 + Psest_0287 0.62 -0.9
303,092 + Psest_0287 0.62 -1.0
303,092 + Psest_0287 0.62 -1.1
303,092 + Psest_0287 0.62 -0.1
303,092 + Psest_0287 0.62 -1.5
303,093 - Psest_0287 0.62 +4.0
303,093 - Psest_0287 0.62 +1.1
303,093 - Psest_0287 0.62 -3.8
303,093 - Psest_0287 0.62 +0.5
303,542 - Psest_0288 0.11 +0.8
303,542 - Psest_0288 0.11 +0.3
303,777 + Psest_0288 0.30 +1.5
303,795 - Psest_0288 0.32 -1.1
303,875 + Psest_0288 0.38 -2.3
303,875 + Psest_0288 0.38 +3.4
303,875 + Psest_0288 0.38 -2.7
303,876 - Psest_0288 0.38 +1.5
303,876 - Psest_0288 0.38 +2.5
303,878 + Psest_0288 0.38 -0.9
303,878 + Psest_0288 0.38 -2.2
303,878 + Psest_0288 0.38 -0.2
303,879 - Psest_0288 0.39 -0.7
303,879 - Psest_0288 0.39 -1.5
303,896 + Psest_0288 0.40 -2.4
303,897 - Psest_0288 0.40 -0.5
304,205 + Psest_0288 0.65 -1.1
304,205 + Psest_0288 0.65 +3.8
304,205 + Psest_0288 0.65 +0.6
304,206 - Psest_0288 0.66 +1.2
304,206 - Psest_0288 0.66 -0.8
304,268 + Psest_0288 0.71 -0.2
304,269 - Psest_0288 0.71 -0.9
304,269 - Psest_0288 0.71 -1.3
304,410 - Psest_0288 0.82 -0.1

Or see this region's nucleotide sequence