Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2879

Experiment: Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2878 and Psest_2879 overlap by 4 nucleotidesPsest_2879 and Psest_2880 overlap by 8 nucleotides Psest_2878: Psest_2878 - conserved hypothetical protein, at 3,069,630 to 3,070,622 _2878 Psest_2879: Psest_2879 - Predicted deacetylase, at 3,070,619 to 3,071,380 _2879 Psest_2880: Psest_2880 - Glycosyltransferase, at 3,071,373 to 3,072,488 _2880 Position (kb) 3070 3071 3072Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3069.712 kb on + strandat 3069.713 kb on - strandat 3069.713 kb on - strandat 3069.713 kb on - strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.721 kb on + strandat 3069.721 kb on + strandat 3069.721 kb on + strandat 3069.722 kb on - strandat 3069.722 kb on - strandat 3069.722 kb on - strandat 3069.722 kb on - strandat 3069.722 kb on - strandat 3069.722 kb on - strandat 3069.759 kb on - strand, within Psest_2878at 3069.903 kb on + strand, within Psest_2878at 3070.032 kb on + strand, within Psest_2878at 3070.033 kb on - strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.285 kb on + strand, within Psest_2878at 3070.285 kb on + strand, within Psest_2878at 3070.286 kb on - strand, within Psest_2878at 3070.286 kb on - strand, within Psest_2878at 3070.286 kb on - strand, within Psest_2878at 3070.501 kb on - strand, within Psest_2878at 3070.720 kb on - strand, within Psest_2879at 3070.900 kb on - strand, within Psest_2879at 3070.923 kb on + strand, within Psest_2879at 3070.923 kb on + strand, within Psest_2879at 3070.923 kb on + strand, within Psest_2879at 3070.924 kb on - strand, within Psest_2879at 3070.924 kb on - strand, within Psest_2879at 3071.073 kb on + strand, within Psest_2879at 3071.073 kb on + strand, within Psest_2879at 3071.094 kb on + strand, within Psest_2879at 3071.094 kb on + strand, within Psest_2879at 3071.094 kb on + strand, within Psest_2879at 3071.094 kb on + strand, within Psest_2879at 3071.094 kb on + strand, within Psest_2879at 3071.095 kb on - strand, within Psest_2879at 3071.095 kb on - strand, within Psest_2879at 3071.095 kb on - strand, within Psest_2879at 3071.154 kb on + strand, within Psest_2879at 3071.155 kb on - strand, within Psest_2879at 3071.382 kb on + strandat 3071.383 kb on - strandat 3071.383 kb on - strandat 3071.383 kb on - strandat 3071.535 kb on - strand, within Psest_2880at 3071.717 kb on - strand, within Psest_2880at 3071.971 kb on - strand, within Psest_2880at 3072.067 kb on + strand, within Psest_2880at 3072.067 kb on + strand, within Psest_2880at 3072.098 kb on + strand, within Psest_2880at 3072.171 kb on - strand, within Psest_2880at 3072.173 kb on + strand, within Psest_2880at 3072.215 kb on - strand, within Psest_2880at 3072.215 kb on - strand, within Psest_2880at 3072.316 kb on - strand, within Psest_2880at 3072.328 kb on - strand, within Psest_2880at 3072.328 kb on - strand, within Psest_2880at 3072.328 kb on - strand, within Psest_2880at 3072.335 kb on - strand, within Psest_2880

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
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3,069,712 + +0.0
3,069,713 - -0.0
3,069,713 - +0.1
3,069,713 - +0.4
3,069,718 + +0.5
3,069,718 + -1.5
3,069,718 + +1.4
3,069,718 + -2.1
3,069,718 + +2.0
3,069,718 + -0.7
3,069,718 + +0.3
3,069,718 + -2.3
3,069,718 + -1.6
3,069,718 + +0.6
3,069,718 + -1.9
3,069,718 + +0.3
3,069,718 + -0.5
3,069,718 + -0.2
3,069,718 + -2.5
3,069,719 - -2.1
3,069,719 - +2.4
3,069,719 - +0.5
3,069,719 - +0.6
3,069,719 - +0.2
3,069,719 - -2.5
3,069,719 - +1.3
3,069,719 - +0.3
3,069,719 - +1.7
3,069,719 - +0.7
3,069,719 - +1.7
3,069,719 - -1.7
3,069,719 - +0.4
3,069,719 - +1.3
3,069,719 - +0.2
3,069,721 + +1.2
3,069,721 + -0.5
3,069,721 + +0.2
3,069,722 - -0.1
3,069,722 - -1.9
3,069,722 - -1.7
3,069,722 - +1.2
3,069,722 - -0.1
3,069,722 - -1.6
3,069,759 - Psest_2878 0.13 -0.0
3,069,903 + Psest_2878 0.27 +1.4
3,070,032 + Psest_2878 0.40 +0.3
3,070,033 - Psest_2878 0.41 +1.9
3,070,222 + Psest_2878 0.60 -1.3
3,070,222 + Psest_2878 0.60 -1.7
3,070,222 + Psest_2878 0.60 -1.5
3,070,222 + Psest_2878 0.60 -2.9
3,070,222 + Psest_2878 0.60 +0.1
3,070,222 + Psest_2878 0.60 +0.4
3,070,222 + Psest_2878 0.60 -3.0
3,070,223 - Psest_2878 0.60 -0.9
3,070,223 - Psest_2878 0.60 -0.9
3,070,223 - Psest_2878 0.60 -0.6
3,070,223 - Psest_2878 0.60 +0.3
3,070,223 - Psest_2878 0.60 -1.2
3,070,223 - Psest_2878 0.60 -0.8
3,070,223 - Psest_2878 0.60 +0.1
3,070,223 - Psest_2878 0.60 -1.6
3,070,223 - Psest_2878 0.60 -1.0
3,070,223 - Psest_2878 0.60 -0.7
3,070,223 - Psest_2878 0.60 +1.2
3,070,223 - Psest_2878 0.60 +1.9
3,070,285 + Psest_2878 0.66 -1.9
3,070,285 + Psest_2878 0.66 +0.4
3,070,286 - Psest_2878 0.66 -0.5
3,070,286 - Psest_2878 0.66 +0.5
3,070,286 - Psest_2878 0.66 +1.7
3,070,501 - Psest_2878 0.88 -0.8
3,070,720 - Psest_2879 0.13 -2.5
3,070,900 - Psest_2879 0.37 +0.4
3,070,923 + Psest_2879 0.40 -2.3
3,070,923 + Psest_2879 0.40 -0.6
3,070,923 + Psest_2879 0.40 -0.3
3,070,924 - Psest_2879 0.40 +0.1
3,070,924 - Psest_2879 0.40 -1.3
3,071,073 + Psest_2879 0.60 -0.8
3,071,073 + Psest_2879 0.60 -0.3
3,071,094 + Psest_2879 0.62 -0.9
3,071,094 + Psest_2879 0.62 -0.1
3,071,094 + Psest_2879 0.62 -0.1
3,071,094 + Psest_2879 0.62 -0.6
3,071,094 + Psest_2879 0.62 -1.8
3,071,095 - Psest_2879 0.62 -1.0
3,071,095 - Psest_2879 0.62 +1.9
3,071,095 - Psest_2879 0.62 +0.1
3,071,154 + Psest_2879 0.70 +0.6
3,071,155 - Psest_2879 0.70 +1.3
3,071,382 + -0.8
3,071,383 - +2.9
3,071,383 - +0.4
3,071,383 - +0.6
3,071,535 - Psest_2880 0.15 +1.5
3,071,717 - Psest_2880 0.31 +1.7
3,071,971 - Psest_2880 0.54 -0.1
3,072,067 + Psest_2880 0.62 -0.8
3,072,067 + Psest_2880 0.62 -0.3
3,072,098 + Psest_2880 0.65 -1.5
3,072,171 - Psest_2880 0.72 +1.7
3,072,173 + Psest_2880 0.72 +0.5
3,072,215 - Psest_2880 0.75 +0.7
3,072,215 - Psest_2880 0.75 -1.7
3,072,316 - Psest_2880 0.84 +0.9
3,072,328 - Psest_2880 0.86 +1.4
3,072,328 - Psest_2880 0.86 -2.7
3,072,328 - Psest_2880 0.86 +1.1
3,072,335 - Psest_2880 0.86 +1.1

Or see this region's nucleotide sequence