Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2654

Experiment: Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2653 and Psest_2654 are separated by 18 nucleotidesPsest_2654 and Psest_2655 are separated by 441 nucleotides Psest_2653: Psest_2653 - fatty oxidation complex, beta subunit FadA, at 2,835,454 to 2,836,629 _2653 Psest_2654: Psest_2654 - fatty oxidation complex, alpha subunit FadB, at 2,836,648 to 2,838,795 _2654 Psest_2655: Psest_2655 - Protease II, at 2,839,237 to 2,841,267 _2655 Position (kb) 2836 2837 2838 2839Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2836.655 kb on + strandat 2836.656 kb on - strandat 2836.656 kb on - strandat 2838.936 kb on - strandat 2839.081 kb on + strandat 2839.081 kb on + strandat 2839.082 kb on - strandat 2839.082 kb on - strandat 2839.082 kb on - strandat 2839.082 kb on - strandat 2839.149 kb on + strandat 2839.149 kb on + strandat 2839.150 kb on - strandat 2839.155 kb on + strandat 2839.167 kb on + strandat 2839.188 kb on - strandat 2839.324 kb on + strandat 2839.345 kb on + strandat 2839.345 kb on + strandat 2839.346 kb on - strandat 2839.462 kb on + strand, within Psest_2655at 2839.462 kb on + strand, within Psest_2655at 2839.462 kb on + strand, within Psest_2655at 2839.463 kb on - strand, within Psest_2655at 2839.463 kb on - strand, within Psest_2655at 2839.463 kb on - strand, within Psest_2655at 2839.463 kb on - strand, within Psest_2655at 2839.463 kb on - strand, within Psest_2655at 2839.678 kb on + strand, within Psest_2655at 2839.784 kb on - strand, within Psest_2655at 2839.784 kb on - strand, within Psest_2655at 2839.784 kb on - strand, within Psest_2655

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
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2,836,655 + +0.2
2,836,656 - -1.0
2,836,656 - +3.2
2,838,936 - -2.6
2,839,081 + +1.2
2,839,081 + -0.3
2,839,082 - -0.3
2,839,082 - -2.8
2,839,082 - +0.6
2,839,082 - -0.1
2,839,149 + +0.2
2,839,149 + +2.9
2,839,150 - -1.1
2,839,155 + -1.1
2,839,167 + +0.9
2,839,188 - +1.2
2,839,324 + +1.1
2,839,345 + +0.9
2,839,345 + -2.2
2,839,346 - -1.6
2,839,462 + Psest_2655 0.11 +1.4
2,839,462 + Psest_2655 0.11 +1.0
2,839,462 + Psest_2655 0.11 -0.5
2,839,463 - Psest_2655 0.11 +0.6
2,839,463 - Psest_2655 0.11 +0.8
2,839,463 - Psest_2655 0.11 +1.1
2,839,463 - Psest_2655 0.11 -0.3
2,839,463 - Psest_2655 0.11 -0.5
2,839,678 + Psest_2655 0.22 +0.0
2,839,784 - Psest_2655 0.27 -1.3
2,839,784 - Psest_2655 0.27 -1.5
2,839,784 - Psest_2655 0.27 -0.3

Or see this region's nucleotide sequence