Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2035

Experiment: Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2034 and Psest_2035 overlap by 4 nucleotidesPsest_2035 and Psest_2036 are separated by 72 nucleotides Psest_2034: Psest_2034 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 2,155,159 to 2,156,484 _2034 Psest_2035: Psest_2035 - crcB protein, at 2,156,481 to 2,156,855 _2035 Psest_2036: Psest_2036 - seryl-tRNA synthetase, at 2,156,928 to 2,158,208 _2036 Position (kb) 2156 2157Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2155.537 kb on + strand, within Psest_2034at 2155.630 kb on + strand, within Psest_2034at 2155.630 kb on + strand, within Psest_2034at 2155.630 kb on + strand, within Psest_2034at 2155.631 kb on - strand, within Psest_2034at 2155.631 kb on - strand, within Psest_2034at 2155.904 kb on - strand, within Psest_2034at 2155.934 kb on + strand, within Psest_2034at 2156.006 kb on - strand, within Psest_2034at 2156.006 kb on - strand, within Psest_2034at 2156.006 kb on - strand, within Psest_2034at 2156.024 kb on + strand, within Psest_2034at 2156.024 kb on + strand, within Psest_2034at 2156.024 kb on + strand, within Psest_2034at 2156.024 kb on + strand, within Psest_2034at 2156.024 kb on + strand, within Psest_2034at 2156.025 kb on - strand, within Psest_2034at 2156.025 kb on - strand, within Psest_2034at 2156.025 kb on - strand, within Psest_2034at 2156.153 kb on - strand, within Psest_2034at 2156.186 kb on - strand, within Psest_2034at 2156.186 kb on - strand, within Psest_2034at 2156.241 kb on - strand, within Psest_2034at 2156.308 kb on + strand, within Psest_2034at 2156.350 kb on + strand, within Psest_2034at 2156.350 kb on + strand, within Psest_2034at 2156.465 kb on + strandat 2156.466 kb on - strandat 2156.466 kb on - strandat 2156.466 kb on - strandat 2156.583 kb on + strand, within Psest_2035at 2156.584 kb on - strand, within Psest_2035at 2156.584 kb on - strand, within Psest_2035at 2156.637 kb on + strand, within Psest_2035at 2156.637 kb on + strand, within Psest_2035at 2156.787 kb on + strand, within Psest_2035at 2156.874 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
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2,155,537 + Psest_2034 0.29 -0.1
2,155,630 + Psest_2034 0.36 +0.7
2,155,630 + Psest_2034 0.36 +1.6
2,155,630 + Psest_2034 0.36 +0.5
2,155,631 - Psest_2034 0.36 +1.2
2,155,631 - Psest_2034 0.36 -0.1
2,155,904 - Psest_2034 0.56 +2.0
2,155,934 + Psest_2034 0.58 -0.6
2,156,006 - Psest_2034 0.64 +0.5
2,156,006 - Psest_2034 0.64 +1.2
2,156,006 - Psest_2034 0.64 -2.5
2,156,024 + Psest_2034 0.65 +0.4
2,156,024 + Psest_2034 0.65 -0.1
2,156,024 + Psest_2034 0.65 -2.7
2,156,024 + Psest_2034 0.65 -0.2
2,156,024 + Psest_2034 0.65 -1.1
2,156,025 - Psest_2034 0.65 +3.1
2,156,025 - Psest_2034 0.65 -0.5
2,156,025 - Psest_2034 0.65 +0.9
2,156,153 - Psest_2034 0.75 -1.9
2,156,186 - Psest_2034 0.77 +0.2
2,156,186 - Psest_2034 0.77 +1.4
2,156,241 - Psest_2034 0.82 +2.2
2,156,308 + Psest_2034 0.87 -1.7
2,156,350 + Psest_2034 0.90 -1.0
2,156,350 + Psest_2034 0.90 -0.8
2,156,465 + -0.4
2,156,466 - -1.5
2,156,466 - -1.0
2,156,466 - -1.4
2,156,583 + Psest_2035 0.27 -1.1
2,156,584 - Psest_2035 0.27 -0.2
2,156,584 - Psest_2035 0.27 -0.2
2,156,637 + Psest_2035 0.42 +0.4
2,156,637 + Psest_2035 0.42 +0.0
2,156,787 + Psest_2035 0.82 -0.6
2,156,874 + +0.8

Or see this region's nucleotide sequence