Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1702

Experiment: Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1701 and Psest_1702 are separated by 120 nucleotidesPsest_1702 and Psest_1703 are separated by 53 nucleotidesPsest_1703 and Psest_1704 are separated by 63 nucleotides Psest_1701: Psest_1701 - Fe-S oxidoreductase, at 1,807,283 to 1,808,179 _1701 Psest_1702: Psest_1702 - hypothetical protein, at 1,808,300 to 1,808,911 _1702 Psest_1703: Psest_1703 - Uncharacterized protein conserved in bacteria, at 1,808,965 to 1,809,531 _1703 Psest_1704: Psest_1704 - Dehydrogenases (flavoproteins), at 1,809,595 to 1,811,250 _1704 Position (kb) 1808 1809Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1807.310 kb on + strandat 1807.310 kb on + strandat 1807.310 kb on + strandat 1807.314 kb on + strandat 1807.314 kb on + strandat 1807.314 kb on + strandat 1807.315 kb on - strandat 1807.315 kb on - strandat 1807.315 kb on - strandat 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.409 kb on + strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.410 kb on - strand, within Psest_1701at 1807.685 kb on + strand, within Psest_1701at 1807.685 kb on + strand, within Psest_1701at 1807.685 kb on + strand, within Psest_1701at 1807.685 kb on + strand, within Psest_1701at 1807.686 kb on - strand, within Psest_1701at 1807.686 kb on - strand, within Psest_1701at 1807.686 kb on - strand, within Psest_1701at 1807.686 kb on - strand, within Psest_1701at 1807.771 kb on + strand, within Psest_1701at 1807.855 kb on + strand, within Psest_1701at 1807.855 kb on + strand, within Psest_1701at 1807.855 kb on + strand, within Psest_1701at 1807.856 kb on - strand, within Psest_1701at 1808.060 kb on + strand, within Psest_1701at 1808.060 kb on + strand, within Psest_1701at 1808.060 kb on + strand, within Psest_1701at 1808.060 kb on + strand, within Psest_1701at 1808.061 kb on - strand, within Psest_1701at 1808.061 kb on - strand, within Psest_1701at 1808.061 kb on - strand, within Psest_1701at 1808.061 kb on - strand, within Psest_1701at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.474 kb on + strand, within Psest_1702at 1808.475 kb on - strand, within Psest_1702at 1808.475 kb on - strand, within Psest_1702at 1808.475 kb on - strand, within Psest_1702at 1808.513 kb on + strand, within Psest_1702at 1808.514 kb on - strand, within Psest_1702at 1808.565 kb on - strand, within Psest_1702at 1808.646 kb on - strand, within Psest_1702at 1808.654 kb on + strand, within Psest_1702at 1808.655 kb on - strand, within Psest_1702at 1808.751 kb on + strand, within Psest_1702at 1808.751 kb on + strand, within Psest_1702at 1808.752 kb on - strand, within Psest_1702at 1808.752 kb on - strand, within Psest_1702at 1808.834 kb on + strand, within Psest_1702at 1808.834 kb on + strand, within Psest_1702at 1808.834 kb on + strand, within Psest_1702at 1808.834 kb on + strand, within Psest_1702at 1808.835 kb on - strand, within Psest_1702at 1808.835 kb on - strand, within Psest_1702at 1808.879 kb on + strandat 1808.879 kb on + strandat 1808.879 kb on + strandat 1808.879 kb on + strandat 1808.879 kb on + strandat 1808.879 kb on + strandat 1808.880 kb on - strandat 1808.973 kb on + strandat 1808.993 kb on + strandat 1808.994 kb on - strandat 1808.994 kb on - strandat 1809.039 kb on - strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.044 kb on + strand, within Psest_1703at 1809.045 kb on - strand, within Psest_1703at 1809.103 kb on + strand, within Psest_1703at 1809.107 kb on - strand, within Psest_1703at 1809.181 kb on + strand, within Psest_1703at 1809.181 kb on + strand, within Psest_1703at 1809.181 kb on + strand, within Psest_1703at 1809.181 kb on + strand, within Psest_1703at 1809.182 kb on - strand, within Psest_1703at 1809.294 kb on + strand, within Psest_1703at 1809.379 kb on + strand, within Psest_1703at 1809.379 kb on + strand, within Psest_1703at 1809.380 kb on - strand, within Psest_1703at 1809.380 kb on - strand, within Psest_1703at 1809.430 kb on + strand, within Psest_1703at 1809.430 kb on + strand, within Psest_1703at 1809.430 kb on + strand, within Psest_1703at 1809.430 kb on + strand, within Psest_1703at 1809.430 kb on + strand, within Psest_1703at 1809.431 kb on - strand, within Psest_1703at 1809.431 kb on - strand, within Psest_1703at 1809.431 kb on - strand, within Psest_1703at 1809.431 kb on - strand, within Psest_1703at 1809.431 kb on - strand, within Psest_1703at 1809.529 kb on + strandat 1809.596 kb on + strandat 1809.596 kb on + strandat 1809.596 kb on + strandat 1809.596 kb on + strandat 1809.596 kb on + strandat 1809.596 kb on + strandat 1809.597 kb on - strandat 1809.597 kb on - strandat 1809.597 kb on - strandat 1809.597 kb on - strandat 1809.597 kb on - strandat 1809.597 kb on - strandat 1809.597 kb on - strandat 1809.597 kb on - strandat 1809.597 kb on - strandat 1809.597 kb on - strandat 1809.597 kb on - strandat 1809.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
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1,807,310 + +0.3
1,807,310 + +0.1
1,807,310 + +0.5
1,807,314 + +0.1
1,807,314 + -0.6
1,807,314 + -0.2
1,807,315 - -0.1
1,807,315 - +1.6
1,807,315 - -2.0
1,807,409 + Psest_1701 0.14 +0.2
1,807,409 + Psest_1701 0.14 -0.9
1,807,409 + Psest_1701 0.14 +0.3
1,807,409 + Psest_1701 0.14 +0.0
1,807,409 + Psest_1701 0.14 +2.1
1,807,409 + Psest_1701 0.14 -2.2
1,807,409 + Psest_1701 0.14 +0.6
1,807,409 + Psest_1701 0.14 +1.3
1,807,409 + Psest_1701 0.14 +0.7
1,807,410 - Psest_1701 0.14 +0.2
1,807,410 - Psest_1701 0.14 -1.6
1,807,410 - Psest_1701 0.14 -0.6
1,807,410 - Psest_1701 0.14 -1.7
1,807,410 - Psest_1701 0.14 -1.1
1,807,410 - Psest_1701 0.14 +1.0
1,807,410 - Psest_1701 0.14 +1.1
1,807,685 + Psest_1701 0.45 +0.6
1,807,685 + Psest_1701 0.45 -1.3
1,807,685 + Psest_1701 0.45 +1.2
1,807,685 + Psest_1701 0.45 -0.2
1,807,686 - Psest_1701 0.45 -2.1
1,807,686 - Psest_1701 0.45 +0.1
1,807,686 - Psest_1701 0.45 -0.2
1,807,686 - Psest_1701 0.45 -0.0
1,807,771 + Psest_1701 0.54 +0.5
1,807,855 + Psest_1701 0.64 +0.6
1,807,855 + Psest_1701 0.64 +0.9
1,807,855 + Psest_1701 0.64 +0.5
1,807,856 - Psest_1701 0.64 +1.1
1,808,060 + Psest_1701 0.87 -0.7
1,808,060 + Psest_1701 0.87 -0.8
1,808,060 + Psest_1701 0.87 +1.4
1,808,060 + Psest_1701 0.87 -1.1
1,808,061 - Psest_1701 0.87 -2.8
1,808,061 - Psest_1701 0.87 -0.8
1,808,061 - Psest_1701 0.87 -2.6
1,808,061 - Psest_1701 0.87 +0.5
1,808,474 + Psest_1702 0.28 +0.1
1,808,474 + Psest_1702 0.28 +1.3
1,808,474 + Psest_1702 0.28 +0.9
1,808,474 + Psest_1702 0.28 +0.2
1,808,474 + Psest_1702 0.28 -0.8
1,808,474 + Psest_1702 0.28 +0.8
1,808,474 + Psest_1702 0.28 -1.1
1,808,474 + Psest_1702 0.28 -0.9
1,808,474 + Psest_1702 0.28 -0.3
1,808,474 + Psest_1702 0.28 +1.9
1,808,475 - Psest_1702 0.29 -0.7
1,808,475 - Psest_1702 0.29 +0.7
1,808,475 - Psest_1702 0.29 -0.2
1,808,513 + Psest_1702 0.35 -0.3
1,808,514 - Psest_1702 0.35 +2.0
1,808,565 - Psest_1702 0.43 +0.3
1,808,646 - Psest_1702 0.57 -1.7
1,808,654 + Psest_1702 0.58 -0.4
1,808,655 - Psest_1702 0.58 -0.8
1,808,751 + Psest_1702 0.74 -1.5
1,808,751 + Psest_1702 0.74 -0.7
1,808,752 - Psest_1702 0.74 -0.6
1,808,752 - Psest_1702 0.74 +0.8
1,808,834 + Psest_1702 0.87 -1.1
1,808,834 + Psest_1702 0.87 +0.2
1,808,834 + Psest_1702 0.87 -1.2
1,808,834 + Psest_1702 0.87 -2.5
1,808,835 - Psest_1702 0.87 -0.4
1,808,835 - Psest_1702 0.87 -2.5
1,808,879 + +0.6
1,808,879 + -2.5
1,808,879 + +1.3
1,808,879 + +0.2
1,808,879 + -0.4
1,808,879 + +0.1
1,808,880 - -1.0
1,808,973 + -0.1
1,808,993 + +2.8
1,808,994 - +1.3
1,808,994 - +0.2
1,809,039 - Psest_1703 0.13 -0.8
1,809,044 + Psest_1703 0.14 -0.7
1,809,044 + Psest_1703 0.14 +0.6
1,809,044 + Psest_1703 0.14 +1.3
1,809,044 + Psest_1703 0.14 -2.6
1,809,044 + Psest_1703 0.14 +0.7
1,809,044 + Psest_1703 0.14 +0.2
1,809,044 + Psest_1703 0.14 -2.2
1,809,045 - Psest_1703 0.14 -1.8
1,809,103 + Psest_1703 0.24 -0.7
1,809,107 - Psest_1703 0.25 +0.4
1,809,181 + Psest_1703 0.38 +0.2
1,809,181 + Psest_1703 0.38 -1.9
1,809,181 + Psest_1703 0.38 +0.2
1,809,181 + Psest_1703 0.38 +1.8
1,809,182 - Psest_1703 0.38 +0.1
1,809,294 + Psest_1703 0.58 -0.1
1,809,379 + Psest_1703 0.73 -2.3
1,809,379 + Psest_1703 0.73 +0.4
1,809,380 - Psest_1703 0.73 +1.8
1,809,380 - Psest_1703 0.73 +0.6
1,809,430 + Psest_1703 0.82 +2.0
1,809,430 + Psest_1703 0.82 -0.1
1,809,430 + Psest_1703 0.82 +0.8
1,809,430 + Psest_1703 0.82 +1.5
1,809,430 + Psest_1703 0.82 -3.0
1,809,431 - Psest_1703 0.82 -0.0
1,809,431 - Psest_1703 0.82 -2.7
1,809,431 - Psest_1703 0.82 +0.6
1,809,431 - Psest_1703 0.82 +0.6
1,809,431 - Psest_1703 0.82 -0.4
1,809,529 + -1.0
1,809,596 + -0.8
1,809,596 + -0.4
1,809,596 + -0.8
1,809,596 + -0.5
1,809,596 + +0.8
1,809,596 + +0.8
1,809,597 - +0.4
1,809,597 - -0.6
1,809,597 - -0.2
1,809,597 - +0.9
1,809,597 - +2.3
1,809,597 - -0.6
1,809,597 - -0.7
1,809,597 - -1.0
1,809,597 - -1.2
1,809,597 - -0.4
1,809,597 - +0.2
1,809,597 - +1.5

Or see this region's nucleotide sequence