Experiment: Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1358 and Psest_1359 are separated by 134 nucleotides Psest_1359 and Psest_1360 are separated by 108 nucleotides
Psest_1358: Psest_1358 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 1,468,242 to 1,469,489
_1358
Psest_1359: Psest_1359 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 1,469,624 to 1,470,067
_1359
Psest_1360: Psest_1360 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,470,176 to 1,471,153
_1360
Position (kb)
1469
1470
1471 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1468.898 kb on - strand, within Psest_1358 at 1468.909 kb on + strand, within Psest_1358 at 1468.909 kb on + strand, within Psest_1358 at 1468.910 kb on - strand, within Psest_1358 at 1468.910 kb on - strand, within Psest_1358 at 1469.155 kb on + strand, within Psest_1358 at 1469.156 kb on - strand, within Psest_1358 at 1469.156 kb on - strand, within Psest_1358 at 1469.156 kb on - strand, within Psest_1358 at 1469.362 kb on + strand, within Psest_1358 at 1469.362 kb on + strand, within Psest_1358 at 1469.363 kb on - strand, within Psest_1358 at 1469.363 kb on - strand, within Psest_1358 at 1469.363 kb on - strand, within Psest_1358 at 1469.363 kb on - strand, within Psest_1358 at 1469.363 kb on - strand, within Psest_1358 at 1469.589 kb on + strand at 1469.590 kb on - strand at 1469.642 kb on + strand at 1469.642 kb on + strand at 1469.642 kb on + strand at 1469.694 kb on - strand, within Psest_1359 at 1469.718 kb on + strand, within Psest_1359 at 1469.718 kb on + strand, within Psest_1359 at 1469.719 kb on - strand, within Psest_1359 at 1469.719 kb on - strand, within Psest_1359 at 1469.719 kb on - strand, within Psest_1359 at 1469.719 kb on - strand, within Psest_1359 at 1469.719 kb on - strand, within Psest_1359 at 1469.719 kb on - strand, within Psest_1359 at 1470.136 kb on + strand at 1470.136 kb on + strand at 1470.137 kb on - strand at 1470.137 kb on - strand at 1470.137 kb on - strand at 1470.165 kb on - strand at 1470.336 kb on + strand, within Psest_1360 at 1470.336 kb on + strand, within Psest_1360 at 1470.336 kb on + strand, within Psest_1360 at 1470.337 kb on - strand, within Psest_1360 at 1470.337 kb on - strand, within Psest_1360 at 1470.337 kb on - strand, within Psest_1360 at 1470.769 kb on + strand, within Psest_1360
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml remove 1,468,898 - Psest_1358 0.53 -0.0 1,468,909 + Psest_1358 0.53 -0.8 1,468,909 + Psest_1358 0.53 +1.1 1,468,910 - Psest_1358 0.54 -1.5 1,468,910 - Psest_1358 0.54 -3.0 1,469,155 + Psest_1358 0.73 +0.4 1,469,156 - Psest_1358 0.73 -0.1 1,469,156 - Psest_1358 0.73 +1.5 1,469,156 - Psest_1358 0.73 -1.2 1,469,362 + Psest_1358 0.90 -1.1 1,469,362 + Psest_1358 0.90 -1.0 1,469,363 - Psest_1358 0.90 -3.3 1,469,363 - Psest_1358 0.90 +1.3 1,469,363 - Psest_1358 0.90 -0.0 1,469,363 - Psest_1358 0.90 -2.6 1,469,363 - Psest_1358 0.90 +0.1 1,469,589 + -1.8 1,469,590 - -0.1 1,469,642 + +0.2 1,469,642 + -0.2 1,469,642 + +2.0 1,469,694 - Psest_1359 0.16 -2.6 1,469,718 + Psest_1359 0.21 +1.5 1,469,718 + Psest_1359 0.21 -1.5 1,469,719 - Psest_1359 0.21 -0.7 1,469,719 - Psest_1359 0.21 +0.5 1,469,719 - Psest_1359 0.21 -1.0 1,469,719 - Psest_1359 0.21 +0.3 1,469,719 - Psest_1359 0.21 -1.9 1,469,719 - Psest_1359 0.21 -0.9 1,470,136 + +1.7 1,470,136 + +1.1 1,470,137 - -2.3 1,470,137 - -2.3 1,470,137 - -1.5 1,470,165 - -2.0 1,470,336 + Psest_1360 0.16 -1.3 1,470,336 + Psest_1360 0.16 -0.3 1,470,336 + Psest_1360 0.16 +0.5 1,470,337 - Psest_1360 0.16 -1.3 1,470,337 - Psest_1360 0.16 -0.8 1,470,337 - Psest_1360 0.16 -0.5 1,470,769 + Psest_1360 0.61 -0.4
Or see this region's nucleotide sequence