Strain Fitness in Pseudomonas stutzeri RCH2

Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4406

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	Fusidic 0.016 mg/ml
				remove
6,081	+			+1.9
6,081	+			+2.3
6,081	+			+0.0
6,081	+			-0.8
6,108	+			+0.0
6,108	+			-0.4
6,240	+			+0.2
6,240	+			-0.1
6,331	+			+1.3
6,349	+			+0.5
6,349	+			+0.5
6,349	+			+1.5
6,349	+			+0.9
6,350	-			+1.9
6,356	+			-0.7
6,356	+			-1.2
6,356	+			-0.5
6,356	+			+0.9
6,447	+			-0.7
6,447	+			+3.4
6,447	+			+1.5
6,447	+			-0.5
6,447	+			-0.3
6,498	+			+0.3
6,498	+			+3.9
6,498	+			-1.0
6,498	+			-0.8
6,509	+			+1.1
6,509	+			-0.7
6,509	+			-0.7
6,509	+			+1.5
6,509	+			+2.5
6,509	+			+1.2
6,509	+			+2.1
6,509	+			+3.1
6,509	+			-0.3
6,509	+			+0.9
6,509	+			+0.5
6,510	-			+3.1
6,510	-			+1.5
6,522	+			+1.8
6,584	+			-0.3
6,638	+			+1.2
6,638	+			-1.3
6,638	+			-0.8
6,658	+	Psest_4404	0.14	+2.4
6,658	+	Psest_4404	0.14	-1.2
6,658	+	Psest_4404	0.14	+2.0
6,658	+	Psest_4404	0.14	-1.1
6,658	+	Psest_4404	0.14	+0.5
6,658	+	Psest_4404	0.14	-1.0
6,658	+	Psest_4404	0.14	+2.5
6,658	+	Psest_4404	0.14	+0.5
6,658	+	Psest_4404	0.14	+4.5
6,658	+	Psest_4404	0.14	-1.0
6,658	+	Psest_4404	0.14	+3.5
6,658	+	Psest_4404	0.14	-0.8
6,658	+	Psest_4404	0.14	-1.8
6,658	+	Psest_4404	0.14	+0.8
6,658	+	Psest_4404	0.14	+2.5
6,658	+	Psest_4404	0.14	+0.5
6,658	+	Psest_4404	0.14	-0.4
6,658	+	Psest_4404	0.14	+1.2
6,658	+	Psest_4404	0.14	+0.2
6,659	-	Psest_4404	0.14	+1.3
6,659	-	Psest_4404	0.14	+0.9
6,659	-	Psest_4404	0.14	+0.8
6,659	-	Psest_4404	0.14	-0.8
6,659	-	Psest_4404	0.14	+0.1
6,659	-	Psest_4404	0.14	+0.2
6,659	-	Psest_4404	0.14	+0.2
6,659	-	Psest_4404	0.14	-1.5
6,659	-	Psest_4404	0.14	+1.0
6,665	+	Psest_4404	0.16	-0.7
6,665	+	Psest_4404	0.16	+0.4
6,665	+	Psest_4404	0.16	-0.1
6,665	+	Psest_4404	0.16	+0.9
6,665	+	Psest_4404	0.16	-0.1
6,665	+	Psest_4404	0.16	+1.2
6,665	+	Psest_4404	0.16	-0.0
6,665	+	Psest_4404	0.16	-0.7
6,666	-	Psest_4404	0.16	-0.1
6,716	+	Psest_4404	0.35	-0.2
6,716	+	Psest_4404	0.35	-1.2
6,716	+	Psest_4404	0.35	+0.9
6,716	+	Psest_4404	0.35	+0.4
6,716	+	Psest_4404	0.35	-1.4
6,717	-	Psest_4404	0.35	+3.8
6,717	-	Psest_4404	0.35	+3.1
6,717	-	Psest_4404	0.35	+2.1
6,743	+	Psest_4404	0.45	+1.8
6,743	+	Psest_4404	0.45	-1.4
6,743	+	Psest_4404	0.45	+0.2
6,743	+	Psest_4404	0.45	+0.5
6,743	+	Psest_4404	0.45	-1.0
6,743	+	Psest_4404	0.45	-1.3
6,743	+	Psest_4404	0.45	+3.7
6,744	-	Psest_4404	0.45	+1.2
6,744	-	Psest_4404	0.45	+0.5
6,744	-	Psest_4404	0.45	+2.5
6,744	-	Psest_4404	0.45	-1.1
6,744	-	Psest_4404	0.45	+2.2
6,744	-	Psest_4404	0.45	+0.7
6,744	-	Psest_4404	0.45	-1.1
6,744	-	Psest_4404	0.45	+0.5
6,744	-	Psest_4404	0.45	+0.7
6,744	-	Psest_4404	0.45	-2.3
6,858	+	Psest_4404	0.87	-0.3
6,858	+	Psest_4404	0.87	-2.1
6,858	+	Psest_4404	0.87	-0.5
6,858	+	Psest_4404	0.87	+4.7
6,858	+	Psest_4404	0.87	+0.2
6,858	+	Psest_4404	0.87	+2.2
6,858	+	Psest_4404	0.87	-1.3
6,858	+	Psest_4404	0.87	-2.2
6,858	+	Psest_4404	0.87	-1.1
6,858	+	Psest_4404	0.87	-0.5
6,858	+	Psest_4404	0.87	-0.2
6,858	+	Psest_4404	0.87	+4.2
6,858	+	Psest_4404	0.87	-0.7
6,858	+	Psest_4404	0.87	+1.5
6,858	+	Psest_4404	0.87	+0.9
6,858	+	Psest_4404	0.87	+0.8
6,858	+	Psest_4404	0.87	+0.5
6,858	+	Psest_4404	0.87	+1.9
6,859	-	Psest_4404	0.87	+0.5
6,859	-	Psest_4404	0.87	+0.3
6,859	-	Psest_4404	0.87	+0.5
6,859	-	Psest_4404	0.87	-0.8
6,859	-	Psest_4404	0.87	+0.7
6,859	-	Psest_4404	0.87	+0.3
6,859	-	Psest_4404	0.87	+0.8
6,859	-	Psest_4404	0.87	+1.9
6,859	-	Psest_4404	0.87	+0.9
6,859	-	Psest_4404	0.87	+1.3
6,859	-	Psest_4404	0.87	+1.7
6,859	-	Psest_4404	0.87	+1.7
6,859	-	Psest_4404	0.87	+0.5
6,859	-	Psest_4404	0.87	+0.9
6,859	-	Psest_4404	0.87	-1.3
6,859	-	Psest_4404	0.87	+1.5
6,859	-	Psest_4404	0.87	+0.2
6,859	-	Psest_4404	0.87	+1.2
6,859	-	Psest_4404	0.87	+0.0
6,859	-	Psest_4404	0.87	-1.6
6,859	-	Psest_4404	0.87	-0.8
6,861	+	Psest_4404	0.88	+0.4
6,861	+	Psest_4404	0.88	-0.4
6,861	+	Psest_4404	0.88	-1.5
6,861	+	Psest_4404	0.88	+0.9
6,861	+	Psest_4404	0.88	-0.4
6,861	+	Psest_4404	0.88	+0.6
6,861	+	Psest_4404	0.88	-0.1
6,862	-	Psest_4404	0.88	+0.3
6,862	-	Psest_4404	0.88	-1.8
6,862	-	Psest_4404	0.88	+1.5
6,862	-	Psest_4404	0.88	+0.1
7,014	+	Psest_4405	0.69	-0.8
7,014	+	Psest_4405	0.69	-1.5
7,014	+	Psest_4405	0.69	+0.8
7,014	+	Psest_4405	0.69	-0.1
7,014	+	Psest_4405	0.69	+0.3
7,015	-	Psest_4405	0.69	+2.0
7,239	+	Psest_4406	0.82	+0.6
7,239	+	Psest_4406	0.82	-0.5
7,239	+	Psest_4406	0.82	+1.3
7,240	-	Psest_4406	0.83	+2.2
7,240	-	Psest_4406	0.83	+1.5
7,305	-			+0.7
7,445	+			-0.3
7,445	+			-0.1
7,445	+			+1.3
7,445	+			+0.4
7,445	+			-0.2
7,445	+			-1.0
7,445	+			-0.3
7,445	+			+0.9
7,445	+			-0.3
7,445	+			+4.4
7,445	+			+0.9
7,445	+			-0.1
7,445	+			-1.1
7,445	+			+0.8
7,445	+			-1.0
7,445	+			+0.2
7,445	+			-0.8
7,445	+			+0.3
7,445	+			-0.1
7,445	+			+0.9
7,445	+			+0.3
7,446	-			+0.5
7,446	-			+2.2
7,446	-			-1.1
7,446	-			-1.3
7,446	-			+0.7
7,446	-			-0.1
7,446	-			-0.8
7,446	-			+2.5
7,446	-			-0.8
7,446	-			+1.3
7,446	-			+0.5
7,446	-			+0.0
7,446	-			+0.2
7,446	-			+1.4
7,446	-			+1.0
7,446	-			+1.5
7,446	-			+0.2
7,446	-			+0.5
7,446	-			+1.3
7,446	-			-0.3
7,446	-			+2.1
7,446	-			+0.2
7,446	-			+0.2
7,446	-			+0.1
7,446	-			-0.1
7,446	-			-0.7
7,446	-			-1.8
7,446	-			+1.2
7,446	-			+0.2
7,446	-			-0.6
7,446	-			+1.5
7,446	-			+1.2
7,446	-			+0.2
7,446	-			+1.0
7,551	-			+0.4
7,551	-			-0.6
7,631	+			-2.5
7,631	+			-0.1
7,631	+			+2.8
7,632	-			-0.4
7,632	-			+0.8
7,632	-			-0.1
7,632	-			+1.4
7,632	-			+0.2
7,632	-			+0.1
7,632	-			+2.1
7,652	+			+0.0
7,652	+			+1.4
7,652	+			+0.2
7,652	+			+2.5
7,652	+			+0.5
7,653	-			+1.2
7,653	-			+0.6
7,653	-			-0.7
7,653	-			-0.3
7,653	-			-0.6
7,653	-			-1.4
7,653	-			+0.1
7,653	-			+2.4
7,653	-			+0.9
7,653	-			+1.4
7,653	-			+0.7
7,653	-			+1.9
7,664	+			-0.6
7,664	+			+2.5
7,664	+			+0.3
7,664	+			+0.2
7,664	+			+0.7
7,665	-			+0.4
7,665	-			+0.5
7,665	-			-4.0
7,665	-			-0.8
7,665	-			-0.3
7,665	-			+0.5
7,665	-			+2.5
7,665	-			+0.2
7,665	-			-0.8
7,665	-			-1.3
7,699	-			-0.5
7,705	+			-1.0
7,706	-			-0.7
7,825	+			+0.7
7,825	+			+0.7
7,825	+			+0.2
7,825	+			-0.9
7,825	+			+0.2
7,825	+			+0.5
7,825	+			-1.2
7,825	+			+0.3
7,825	+			+4.8
7,825	+			+0.7
7,825	+			-1.0
7,825	+			+0.3
7,825	+			-0.5
7,825	+			-1.6
7,825	+			-1.1
7,825	+			+2.1
7,825	+			+0.3
7,825	+			+0.2
7,825	+			-0.5
7,825	+			-0.4
7,825	+			+1.2
7,825	+			+0.5
7,825	+			+1.6
7,825	+			-0.7
7,825	+			+3.1
7,825	+			-0.1
7,825	+			-1.6
7,825	+			+4.1
7,826	-			+1.5
7,826	-			-1.0
7,826	-			-0.0
7,826	-			-1.0
7,826	-			-0.3
7,826	-			+2.2
7,826	-			-0.2
7,826	-			+0.4
7,826	-			+1.0
7,826	-			+0.1
7,826	-			+0.7
7,826	-			+0.5
7,826	-			+0.0
7,826	-			+1.5
7,826	-			+1.3
7,826	-			+0.2
7,826	-			+0.9
7,826	-			-1.4
7,826	-			+2.3
7,826	-			+3.7
7,826	-			+0.3
7,826	-			+0.2
7,826	-			-0.5
7,826	-			-1.4
7,826	-			-1.2
7,826	-			-0.5
7,846	+			-1.0
7,846	+			-0.3
7,846	+			+0.4
7,846	+			+1.0
7,846	+			-0.7
7,846	+			+0.5
7,846	+			-0.8
7,846	+			+1.5
7,846	+			-1.1
7,846	+			-1.8
7,847	-			+1.3
7,847	-			+0.8
7,847	-			+1.7
7,847	-			-0.5
7,847	-			-1.2
7,847	-			-0.3
7,847	-			+0.2
7,847	-			-0.8
8,138	+			-1.3
8,138	+			+1.9
8,139	-			+0.3
8,139	-			+0.5
8,139	-			-1.1
8,139	-			-1.7
8,149	+			+1.2
8,149	+			-0.7
8,149	+			-1.6
8,150	-			-1.1
8,150	-			+0.8
8,150	-			+2.2
8,150	-			+0.8
8,150	-			+1.6
8,150	-			+0.2
8,159	+			-0.7
8,159	+			-0.1
8,159	+			-1.6
8,160	-			-0.5
8,160	-			+0.4
8,173	+			+0.3
8,173	+			+0.0
8,173	+			-0.7
8,173	+			+1.4
8,173	+			+1.1
8,174	-			+0.8
8,174	-			+1.5
8,174	-			-1.3
8,174	-			+1.4
8,187	+			+0.8
8,187	+			-1.2
8,188	-			-0.3
8,188	-			+0.4

Or see this region's nucleotide sequence