Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4209

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4208 and Psest_4209 are separated by 153 nucleotidesPsest_4209 and Psest_4210 are separated by 114 nucleotidesPsest_4210 and Psest_4211 are separated by 108 nucleotidesPsest_4211 and Psest_4212 are separated by 43 nucleotides Psest_4208: Psest_4208 - AraC-type DNA-binding domain-containing proteins, at 4,386,224 to 4,387,024 _4208 Psest_4209: Psest_4209 - Uncharacterized conserved small protein, at 4,387,178 to 4,387,378 _4209 Psest_4210: Psest_4210 - conserverd hypothetical protein, at 4,387,493 to 4,387,810 _4210 Psest_4211: Psest_4211 - conserverd hypothetical protein, at 4,387,919 to 4,388,215 _4211 Psest_4212: Psest_4212 - conserverd hypothetical protein, at 4,388,259 to 4,388,579 _4212 Position (kb) 4387 4388Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4386.182 kb on - strandat 4386.182 kb on - strandat 4386.369 kb on - strand, within Psest_4208at 4386.398 kb on - strand, within Psest_4208at 4386.468 kb on + strand, within Psest_4208at 4386.503 kb on + strand, within Psest_4208at 4386.503 kb on + strand, within Psest_4208at 4386.503 kb on + strand, within Psest_4208at 4386.503 kb on + strand, within Psest_4208at 4386.503 kb on + strand, within Psest_4208at 4386.503 kb on + strand, within Psest_4208at 4386.504 kb on - strand, within Psest_4208at 4386.504 kb on - strand, within Psest_4208at 4386.523 kb on - strand, within Psest_4208at 4386.612 kb on - strand, within Psest_4208at 4386.612 kb on - strand, within Psest_4208at 4386.682 kb on + strand, within Psest_4208at 4386.682 kb on + strand, within Psest_4208at 4386.682 kb on + strand, within Psest_4208at 4386.682 kb on + strand, within Psest_4208at 4386.682 kb on + strand, within Psest_4208at 4386.682 kb on + strand, within Psest_4208at 4386.682 kb on + strand, within Psest_4208at 4386.683 kb on - strand, within Psest_4208at 4386.683 kb on - strand, within Psest_4208at 4386.683 kb on - strand, within Psest_4208at 4386.683 kb on - strand, within Psest_4208at 4386.686 kb on + strand, within Psest_4208at 4386.686 kb on + strand, within Psest_4208at 4386.686 kb on + strand, within Psest_4208at 4386.686 kb on + strand, within Psest_4208at 4386.687 kb on - strand, within Psest_4208at 4386.687 kb on - strand, within Psest_4208at 4386.740 kb on + strand, within Psest_4208at 4386.741 kb on - strand, within Psest_4208at 4386.741 kb on - strand, within Psest_4208at 4386.795 kb on + strand, within Psest_4208at 4386.795 kb on + strand, within Psest_4208at 4386.795 kb on + strand, within Psest_4208at 4386.796 kb on - strandat 4387.052 kb on - strandat 4387.107 kb on - strandat 4387.220 kb on - strand, within Psest_4209at 4387.271 kb on + strand, within Psest_4209at 4387.271 kb on + strand, within Psest_4209at 4387.272 kb on - strand, within Psest_4209at 4387.391 kb on + strandat 4387.414 kb on + strandat 4387.460 kb on + strandat 4387.461 kb on - strandat 4387.461 kb on - strandat 4387.467 kb on + strandat 4387.467 kb on + strandat 4387.479 kb on - strandat 4387.603 kb on + strand, within Psest_4210at 4387.973 kb on + strand, within Psest_4211at 4388.015 kb on + strand, within Psest_4211at 4388.015 kb on + strand, within Psest_4211at 4388.015 kb on + strand, within Psest_4211at 4388.016 kb on - strand, within Psest_4211at 4388.016 kb on - strand, within Psest_4211at 4388.016 kb on - strand, within Psest_4211at 4388.016 kb on - strand, within Psest_4211at 4388.016 kb on - strand, within Psest_4211at 4388.214 kb on - strandat 4388.270 kb on - strandat 4388.270 kb on - strandat 4388.270 kb on - strandat 4388.270 kb on - strandat 4388.270 kb on - strandat 4388.270 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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4,386,182 - -1.8
4,386,182 - +1.1
4,386,369 - Psest_4208 0.18 -0.4
4,386,398 - Psest_4208 0.22 -1.6
4,386,468 + Psest_4208 0.30 -0.3
4,386,503 + Psest_4208 0.35 +0.5
4,386,503 + Psest_4208 0.35 -0.3
4,386,503 + Psest_4208 0.35 -2.3
4,386,503 + Psest_4208 0.35 -0.2
4,386,503 + Psest_4208 0.35 +0.1
4,386,503 + Psest_4208 0.35 +0.2
4,386,504 - Psest_4208 0.35 -1.1
4,386,504 - Psest_4208 0.35 -0.8
4,386,523 - Psest_4208 0.37 -1.3
4,386,612 - Psest_4208 0.48 +0.3
4,386,612 - Psest_4208 0.48 -2.6
4,386,682 + Psest_4208 0.57 +3.6
4,386,682 + Psest_4208 0.57 +0.8
4,386,682 + Psest_4208 0.57 -1.0
4,386,682 + Psest_4208 0.57 -0.0
4,386,682 + Psest_4208 0.57 -2.0
4,386,682 + Psest_4208 0.57 +0.7
4,386,682 + Psest_4208 0.57 -1.1
4,386,683 - Psest_4208 0.57 -1.1
4,386,683 - Psest_4208 0.57 +0.3
4,386,683 - Psest_4208 0.57 +1.1
4,386,683 - Psest_4208 0.57 +0.1
4,386,686 + Psest_4208 0.58 -1.0
4,386,686 + Psest_4208 0.58 +1.3
4,386,686 + Psest_4208 0.58 -0.4
4,386,686 + Psest_4208 0.58 +1.1
4,386,687 - Psest_4208 0.58 +1.0
4,386,687 - Psest_4208 0.58 -0.4
4,386,740 + Psest_4208 0.64 -2.0
4,386,741 - Psest_4208 0.65 +0.6
4,386,741 - Psest_4208 0.65 -0.7
4,386,795 + Psest_4208 0.71 -0.8
4,386,795 + Psest_4208 0.71 -1.2
4,386,795 + Psest_4208 0.71 -0.4
4,386,796 - +5.5
4,387,052 - +0.7
4,387,107 - -1.8
4,387,220 - Psest_4209 0.21 +0.5
4,387,271 + Psest_4209 0.46 +1.6
4,387,271 + Psest_4209 0.46 -1.9
4,387,272 - Psest_4209 0.47 +1.6
4,387,391 + -1.0
4,387,414 + -0.4
4,387,460 + +0.8
4,387,461 - +1.9
4,387,461 - +0.8
4,387,467 + -0.4
4,387,467 + -0.7
4,387,479 - -1.7
4,387,603 + Psest_4210 0.35 +0.4
4,387,973 + Psest_4211 0.18 -0.5
4,388,015 + Psest_4211 0.32 -0.7
4,388,015 + Psest_4211 0.32 -0.8
4,388,015 + Psest_4211 0.32 -0.8
4,388,016 - Psest_4211 0.33 -0.1
4,388,016 - Psest_4211 0.33 -0.6
4,388,016 - Psest_4211 0.33 -1.4
4,388,016 - Psest_4211 0.33 +0.8
4,388,016 - Psest_4211 0.33 -0.4
4,388,214 - -0.8
4,388,270 - +0.9
4,388,270 - +2.9
4,388,270 - +0.2
4,388,270 - +2.3
4,388,270 - -2.8
4,388,270 - -0.3

Or see this region's nucleotide sequence