Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4158

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4156 and Psest_4157 overlap by 4 nucleotidesPsest_4157 and Psest_4158 are separated by 54 nucleotidesPsest_4158 and Psest_4159 overlap by 4 nucleotidesPsest_4159 and Psest_4160 are separated by 4 nucleotides Psest_4156: Psest_4156 - DNA-binding winged-HTH domains, at 4,338,133 to 4,338,963 _4156 Psest_4157: Psest_4157 - hypothetical protein, at 4,338,960 to 4,339,442 _4157 Psest_4158: Psest_4158 - Flagellar motor protein, at 4,339,497 to 4,340,435 _4158 Psest_4159: Psest_4159 - flagellar motor stator protein MotA, at 4,340,432 to 4,341,304 _4159 Psest_4160: Psest_4160 - RNA polymerase sigma factor, FliA/WhiG family, at 4,341,309 to 4,342,043 _4160 Position (kb) 4339 4340 4341Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.701 kb on - strand, within Psest_4156at 4338.733 kb on + strand, within Psest_4156at 4338.733 kb on + strand, within Psest_4156at 4338.733 kb on + strand, within Psest_4156at 4338.733 kb on + strand, within Psest_4156at 4338.733 kb on + strand, within Psest_4156at 4338.733 kb on + strand, within Psest_4156at 4338.733 kb on + strand, within Psest_4156at 4338.733 kb on + strand, within Psest_4156at 4338.734 kb on - strand, within Psest_4156at 4338.734 kb on - strand, within Psest_4156at 4338.734 kb on - strand, within Psest_4156at 4338.734 kb on - strand, within Psest_4156at 4338.792 kb on - strand, within Psest_4156at 4338.856 kb on + strand, within Psest_4156at 4338.856 kb on + strand, within Psest_4156at 4338.856 kb on + strand, within Psest_4156at 4338.857 kb on - strand, within Psest_4156at 4338.857 kb on - strand, within Psest_4156at 4338.857 kb on - strand, within Psest_4156at 4338.857 kb on - strand, within Psest_4156at 4339.068 kb on + strand, within Psest_4157at 4339.068 kb on + strand, within Psest_4157at 4339.068 kb on + strand, within Psest_4157at 4339.068 kb on + strand, within Psest_4157at 4339.068 kb on + strand, within Psest_4157at 4339.068 kb on + strand, within Psest_4157at 4339.069 kb on - strand, within Psest_4157at 4339.069 kb on - strand, within Psest_4157at 4339.069 kb on - strand, within Psest_4157at 4339.069 kb on - strand, within Psest_4157at 4339.177 kb on - strand, within Psest_4157at 4339.177 kb on - strand, within Psest_4157at 4339.177 kb on - strand, within Psest_4157at 4339.177 kb on - strand, within Psest_4157at 4339.332 kb on + strand, within Psest_4157at 4339.411 kb on - strandat 4339.525 kb on + strandat 4339.526 kb on - strandat 4339.526 kb on - strandat 4339.561 kb on + strandat 4339.561 kb on + strandat 4339.585 kb on + strandat 4339.662 kb on + strand, within Psest_4158at 4339.663 kb on - strand, within Psest_4158at 4340.578 kb on + strand, within Psest_4159at 4340.578 kb on + strand, within Psest_4159at 4340.578 kb on + strand, within Psest_4159at 4340.578 kb on + strand, within Psest_4159at 4340.579 kb on - strand, within Psest_4159at 4340.579 kb on - strand, within Psest_4159at 4340.579 kb on - strand, within Psest_4159at 4340.579 kb on - strand, within Psest_4159at 4340.579 kb on - strand, within Psest_4159at 4340.582 kb on + strand, within Psest_4159at 4340.582 kb on + strand, within Psest_4159at 4340.582 kb on + strand, within Psest_4159at 4340.583 kb on - strand, within Psest_4159at 4340.656 kb on - strand, within Psest_4159at 4340.680 kb on + strand, within Psest_4159at 4341.057 kb on + strand, within Psest_4159at 4341.058 kb on - strand, within Psest_4159at 4341.058 kb on - strand, within Psest_4159at 4341.058 kb on - strand, within Psest_4159at 4341.058 kb on - strand, within Psest_4159at 4341.105 kb on + strand, within Psest_4159at 4341.105 kb on + strand, within Psest_4159at 4341.105 kb on + strand, within Psest_4159at 4341.106 kb on - strand, within Psest_4159at 4341.106 kb on - strand, within Psest_4159at 4341.290 kb on + strandat 4341.290 kb on + strandat 4341.290 kb on + strandat 4341.290 kb on + strandat 4341.290 kb on + strandat 4341.291 kb on - strandat 4341.293 kb on + strandat 4341.293 kb on + strandat 4341.293 kb on + strandat 4341.293 kb on + strandat 4341.293 kb on + strandat 4341.293 kb on + strandat 4341.293 kb on + strandat 4341.294 kb on - strandat 4341.294 kb on - strandat 4341.294 kb on - strandat 4341.294 kb on - strandat 4341.310 kb on + strandat 4341.433 kb on + strand, within Psest_4160at 4341.433 kb on + strand, within Psest_4160at 4341.434 kb on - strand, within Psest_4160at 4341.434 kb on - strand, within Psest_4160at 4341.434 kb on - strand, within Psest_4160at 4341.434 kb on - strand, within Psest_4160

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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4,338,701 - Psest_4156 0.68 -0.5
4,338,701 - Psest_4156 0.68 -1.0
4,338,701 - Psest_4156 0.68 +0.6
4,338,701 - Psest_4156 0.68 -0.7
4,338,701 - Psest_4156 0.68 -0.4
4,338,701 - Psest_4156 0.68 -0.1
4,338,701 - Psest_4156 0.68 -0.0
4,338,701 - Psest_4156 0.68 -0.2
4,338,701 - Psest_4156 0.68 +1.3
4,338,701 - Psest_4156 0.68 -2.2
4,338,701 - Psest_4156 0.68 -2.1
4,338,701 - Psest_4156 0.68 +2.0
4,338,701 - Psest_4156 0.68 +0.3
4,338,701 - Psest_4156 0.68 +0.4
4,338,701 - Psest_4156 0.68 -0.8
4,338,701 - Psest_4156 0.68 +0.2
4,338,701 - Psest_4156 0.68 -0.2
4,338,701 - Psest_4156 0.68 +0.5
4,338,733 + Psest_4156 0.72 -0.4
4,338,733 + Psest_4156 0.72 -2.5
4,338,733 + Psest_4156 0.72 -0.6
4,338,733 + Psest_4156 0.72 -1.1
4,338,733 + Psest_4156 0.72 +0.2
4,338,733 + Psest_4156 0.72 -0.1
4,338,733 + Psest_4156 0.72 -0.6
4,338,733 + Psest_4156 0.72 -0.0
4,338,734 - Psest_4156 0.72 +0.1
4,338,734 - Psest_4156 0.72 +1.2
4,338,734 - Psest_4156 0.72 +1.3
4,338,734 - Psest_4156 0.72 -0.3
4,338,792 - Psest_4156 0.79 -2.9
4,338,856 + Psest_4156 0.87 +0.6
4,338,856 + Psest_4156 0.87 +3.1
4,338,856 + Psest_4156 0.87 +0.0
4,338,857 - Psest_4156 0.87 +0.4
4,338,857 - Psest_4156 0.87 -2.0
4,338,857 - Psest_4156 0.87 +0.6
4,338,857 - Psest_4156 0.87 +0.3
4,339,068 + Psest_4157 0.22 -0.9
4,339,068 + Psest_4157 0.22 +0.3
4,339,068 + Psest_4157 0.22 +0.4
4,339,068 + Psest_4157 0.22 -0.1
4,339,068 + Psest_4157 0.22 -1.9
4,339,068 + Psest_4157 0.22 +1.6
4,339,069 - Psest_4157 0.23 +0.1
4,339,069 - Psest_4157 0.23 -0.5
4,339,069 - Psest_4157 0.23 -1.6
4,339,069 - Psest_4157 0.23 +0.4
4,339,177 - Psest_4157 0.45 +0.6
4,339,177 - Psest_4157 0.45 +0.9
4,339,177 - Psest_4157 0.45 +0.6
4,339,177 - Psest_4157 0.45 +0.4
4,339,332 + Psest_4157 0.77 +2.4
4,339,411 - -0.7
4,339,525 + +0.6
4,339,526 - +0.9
4,339,526 - -1.1
4,339,561 + +1.0
4,339,561 + -2.3
4,339,585 + -1.4
4,339,662 + Psest_4158 0.18 +1.4
4,339,663 - Psest_4158 0.18 +0.1
4,340,578 + Psest_4159 0.17 -1.4
4,340,578 + Psest_4159 0.17 -0.4
4,340,578 + Psest_4159 0.17 -1.3
4,340,578 + Psest_4159 0.17 -0.6
4,340,579 - Psest_4159 0.17 -0.4
4,340,579 - Psest_4159 0.17 +0.9
4,340,579 - Psest_4159 0.17 +0.1
4,340,579 - Psest_4159 0.17 -0.8
4,340,579 - Psest_4159 0.17 -0.0
4,340,582 + Psest_4159 0.17 +0.1
4,340,582 + Psest_4159 0.17 -0.4
4,340,582 + Psest_4159 0.17 +0.2
4,340,583 - Psest_4159 0.17 +0.5
4,340,656 - Psest_4159 0.26 +2.7
4,340,680 + Psest_4159 0.28 +1.2
4,341,057 + Psest_4159 0.72 +0.5
4,341,058 - Psest_4159 0.72 -0.7
4,341,058 - Psest_4159 0.72 +1.0
4,341,058 - Psest_4159 0.72 -0.3
4,341,058 - Psest_4159 0.72 +2.1
4,341,105 + Psest_4159 0.77 -0.6
4,341,105 + Psest_4159 0.77 -1.6
4,341,105 + Psest_4159 0.77 +0.5
4,341,106 - Psest_4159 0.77 -2.3
4,341,106 - Psest_4159 0.77 -0.7
4,341,290 + -0.0
4,341,290 + +0.8
4,341,290 + +0.7
4,341,290 + -0.3
4,341,290 + +1.2
4,341,291 - -0.4
4,341,293 + -0.6
4,341,293 + +0.1
4,341,293 + +0.2
4,341,293 + +0.1
4,341,293 + +0.4
4,341,293 + +0.9
4,341,293 + +0.0
4,341,294 - +0.4
4,341,294 - -0.3
4,341,294 - +0.1
4,341,294 - -1.0
4,341,310 + +0.4
4,341,433 + Psest_4160 0.17 -0.9
4,341,433 + Psest_4160 0.17 -0.9
4,341,434 - Psest_4160 0.17 -1.2
4,341,434 - Psest_4160 0.17 -0.0
4,341,434 - Psest_4160 0.17 +1.1
4,341,434 - Psest_4160 0.17 +0.4

Or see this region's nucleotide sequence