Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3695 and Psest_3696 overlap by 8 nucleotides Psest_3696 and Psest_3697 overlap by 4 nucleotides Psest_3697 and Psest_3698 overlap by 11 nucleotides
Psest_3695: Psest_3695 - Histidine ammonia-lyase, at 3,858,736 to 3,860,268
_3695
Psest_3696: Psest_3696 - Predicted thioesterase, at 3,860,261 to 3,860,686
_3696
Psest_3697: Psest_3697 - Outer membrane lipoprotein carrier protein LolA., at 3,860,683 to 3,861,294
_3697
Psest_3698: Psest_3698 - Predicted exporter, at 3,861,284 to 3,863,632
_3698
Position (kb)
3860
3861
3862 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3859.724 kb on - strand, within Psest_3695 at 3859.724 kb on - strand, within Psest_3695 at 3859.826 kb on - strand, within Psest_3695 at 3860.266 kb on + strand at 3860.278 kb on - strand at 3860.278 kb on - strand at 3860.352 kb on - strand, within Psest_3696 at 3860.352 kb on - strand, within Psest_3696 at 3860.360 kb on + strand, within Psest_3696 at 3860.360 kb on + strand, within Psest_3696 at 3860.360 kb on + strand, within Psest_3696 at 3860.360 kb on + strand, within Psest_3696 at 3860.361 kb on - strand, within Psest_3696 at 3860.361 kb on - strand, within Psest_3696 at 3860.361 kb on - strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.408 kb on + strand, within Psest_3696 at 3860.409 kb on - strand, within Psest_3696 at 3860.409 kb on - strand, within Psest_3696 at 3860.409 kb on - strand, within Psest_3696 at 3860.409 kb on - strand, within Psest_3696 at 3860.454 kb on + strand, within Psest_3696 at 3860.454 kb on + strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.455 kb on - strand, within Psest_3696 at 3860.465 kb on + strand, within Psest_3696 at 3860.465 kb on + strand, within Psest_3696 at 3860.465 kb on + strand, within Psest_3696 at 3860.466 kb on - strand, within Psest_3696 at 3860.466 kb on - strand, within Psest_3696 at 3860.466 kb on - strand, within Psest_3696 at 3860.466 kb on - strand, within Psest_3696 at 3860.503 kb on - strand, within Psest_3696 at 3860.546 kb on + strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.547 kb on - strand, within Psest_3696 at 3860.805 kb on - strand, within Psest_3697 at 3861.198 kb on - strand, within Psest_3697 at 3861.198 kb on - strand, within Psest_3697 at 3862.197 kb on + strand, within Psest_3698 at 3862.197 kb on + strand, within Psest_3698 at 3862.197 kb on + strand, within Psest_3698 at 3862.197 kb on + strand, within Psest_3698 at 3862.197 kb on + strand, within Psest_3698 at 3862.256 kb on + strand, within Psest_3698 at 3862.257 kb on - strand, within Psest_3698 at 3862.257 kb on - strand, within Psest_3698
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 3,859,724 - Psest_3695 0.64 -0.0 3,859,724 - Psest_3695 0.64 -0.8 3,859,826 - Psest_3695 0.71 +0.6 3,860,266 + +1.5 3,860,278 - +1.0 3,860,278 - +0.6 3,860,352 - Psest_3696 0.21 -0.6 3,860,352 - Psest_3696 0.21 +0.5 3,860,360 + Psest_3696 0.23 -0.9 3,860,360 + Psest_3696 0.23 +0.4 3,860,360 + Psest_3696 0.23 -1.2 3,860,360 + Psest_3696 0.23 +0.5 3,860,361 - Psest_3696 0.23 +0.3 3,860,361 - Psest_3696 0.23 -0.1 3,860,361 - Psest_3696 0.23 +0.6 3,860,408 + Psest_3696 0.35 +0.7 3,860,408 + Psest_3696 0.35 +0.8 3,860,408 + Psest_3696 0.35 +1.5 3,860,408 + Psest_3696 0.35 -0.2 3,860,408 + Psest_3696 0.35 -0.8 3,860,409 - Psest_3696 0.35 +0.5 3,860,409 - Psest_3696 0.35 +1.9 3,860,409 - Psest_3696 0.35 +0.6 3,860,409 - Psest_3696 0.35 -0.2 3,860,454 + Psest_3696 0.45 +0.5 3,860,454 + Psest_3696 0.45 +0.1 3,860,455 - Psest_3696 0.46 +0.6 3,860,455 - Psest_3696 0.46 -0.3 3,860,455 - Psest_3696 0.46 -0.1 3,860,455 - Psest_3696 0.46 +1.5 3,860,455 - Psest_3696 0.46 +0.2 3,860,455 - Psest_3696 0.46 +1.4 3,860,465 + Psest_3696 0.48 +1.4 3,860,465 + Psest_3696 0.48 +0.6 3,860,465 + Psest_3696 0.48 +1.6 3,860,466 - Psest_3696 0.48 -1.7 3,860,466 - Psest_3696 0.48 +1.6 3,860,466 - Psest_3696 0.48 +0.4 3,860,466 - Psest_3696 0.48 +2.3 3,860,503 - Psest_3696 0.57 -0.0 3,860,546 + Psest_3696 0.67 -0.4 3,860,547 - Psest_3696 0.67 -0.7 3,860,547 - Psest_3696 0.67 +0.6 3,860,547 - Psest_3696 0.67 -0.3 3,860,547 - Psest_3696 0.67 -0.0 3,860,547 - Psest_3696 0.67 -2.7 3,860,805 - Psest_3697 0.20 +1.0 3,861,198 - Psest_3697 0.84 -0.0 3,861,198 - Psest_3697 0.84 +1.2 3,862,197 + Psest_3698 0.39 -1.2 3,862,197 + Psest_3698 0.39 +2.5 3,862,197 + Psest_3698 0.39 +0.7 3,862,197 + Psest_3698 0.39 +0.1 3,862,197 + Psest_3698 0.39 +1.8 3,862,256 + Psest_3698 0.41 +0.3 3,862,257 - Psest_3698 0.41 +1.2 3,862,257 - Psest_3698 0.41 +0.8
Or see this region's nucleotide sequence