Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3543 and Psest_3544 overlap by 4 nucleotides Psest_3544 and Psest_3545 are separated by 121 nucleotides Psest_3545 and Psest_3546 are separated by 86 nucleotides Psest_3546 and Psest_3547 are separated by 52 nucleotides
Psest_3543: Psest_3543 - hypothetical protein, at 3,724,344 to 3,724,751
_3543
Psest_3544: Psest_3544 - GTP cyclohydrolase II, at 3,724,748 to 3,725,365
_3544
Psest_3545: Psest_3545 - clan AA aspartic protease, TIGR02281 family, at 3,725,487 to 3,726,134
_3545
Psest_3546: Psest_3546 - Phosphatidylglycerophosphatase A and related proteins, at 3,726,221 to 3,726,718
_3546
Psest_3547: Psest_3547 - thiamine-monophosphate kinase, at 3,726,771 to 3,727,733
_3547
Position (kb)
3725
3726
3727 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3724.701 kb on - strand, within Psest_3543 at 3724.701 kb on - strand, within Psest_3543 at 3724.701 kb on - strand, within Psest_3543 at 3725.401 kb on + strand at 3725.402 kb on - strand at 3725.402 kb on - strand at 3725.445 kb on + strand at 3725.446 kb on - strand at 3725.446 kb on - strand at 3725.488 kb on + strand at 3725.489 kb on - strand at 3725.765 kb on + strand, within Psest_3545 at 3725.878 kb on + strand, within Psest_3545 at 3725.879 kb on - strand, within Psest_3545 at 3725.908 kb on + strand, within Psest_3545 at 3725.908 kb on + strand, within Psest_3545 at 3725.908 kb on + strand, within Psest_3545 at 3725.909 kb on - strand, within Psest_3545 at 3725.909 kb on - strand, within Psest_3545 at 3726.129 kb on - strand at 3726.138 kb on + strand at 3726.138 kb on + strand at 3726.139 kb on - strand at 3726.139 kb on - strand at 3726.139 kb on - strand at 3726.139 kb on - strand at 3726.139 kb on - strand at 3726.139 kb on - strand at 3726.590 kb on + strand, within Psest_3546 at 3726.591 kb on - strand, within Psest_3546
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 3,724,701 - Psest_3543 0.88 -0.6 3,724,701 - Psest_3543 0.88 -0.4 3,724,701 - Psest_3543 0.88 -2.6 3,725,401 + +0.4 3,725,402 - -1.5 3,725,402 - +0.1 3,725,445 + -1.2 3,725,446 - -1.6 3,725,446 - -2.9 3,725,488 + -0.9 3,725,489 - +0.5 3,725,765 + Psest_3545 0.43 +0.1 3,725,878 + Psest_3545 0.60 +0.4 3,725,879 - Psest_3545 0.60 +1.4 3,725,908 + Psest_3545 0.65 -0.6 3,725,908 + Psest_3545 0.65 +1.1 3,725,908 + Psest_3545 0.65 +2.1 3,725,909 - Psest_3545 0.65 +1.3 3,725,909 - Psest_3545 0.65 -0.2 3,726,129 - +0.1 3,726,138 + +0.0 3,726,138 + +1.0 3,726,139 - -0.4 3,726,139 - -0.0 3,726,139 - +0.6 3,726,139 - +0.3 3,726,139 - +0.1 3,726,139 - +0.6 3,726,590 + Psest_3546 0.74 +1.1 3,726,591 - Psest_3546 0.74 +0.4
Or see this region's nucleotide sequence